Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ARC58_RS05640 Genome accession   NZ_LN890520
Coordinates   1189628..1190233 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462413     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1184628..1195233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ARC58_RS05620 (ERS209010_01136) - 1185023..1186783 (-) 1761 WP_000156452.1 AAA family ATPase -
  ARC58_RS05625 (ERS209010_01137) matP 1186969..1187421 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  ARC58_RS05630 (ERS209010_01138) ompA 1187493..1188545 (-) 1053 WP_001670727.1 porin OmpA -
  ARC58_RS05635 (ERS209010_01139) sulA 1188902..1189411 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  ARC58_RS05640 (ERS209010_01141) sxy/tfoX 1189628..1190233 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  ARC58_RS05645 (ERS209010_01142) yccS 1190220..1192373 (-) 2154 WP_000950876.1 YccS family putative transporter -
  ARC58_RS05650 (ERS209010_01143) - 1192392..1192838 (-) 447 WP_001261222.1 YccF domain-containing protein -
  ARC58_RS05655 (ERS209010_01144) helD 1192962..1195016 (+) 2055 WP_000420523.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=1115132 ARC58_RS05640 WP_001202375.1 1189628..1190233(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462413]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1115132 ARC58_RS05640 WP_001202375.1 1189628..1190233(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462413]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment