Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HW42_RS18570 Genome accession   NZ_CP009104
Coordinates   3723704..3724219 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain RM9387     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3718704..3729219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW42_RS18550 (HW42_18010) emrA 3718854..3720026 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HW42_RS18555 (HW42_18015) emrB 3720043..3721581 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  HW42_RS18560 (HW42_18020) - 3721839..3722546 (+) 708 WP_001097116.1 RNA ligase family protein -
  HW42_RS18565 (HW42_18025) - 3722543..3723655 (+) 1113 WP_000638145.1 ATP-binding protein -
  HW42_RS18570 (HW42_18030) luxS 3723704..3724219 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  HW42_RS18575 (HW42_18035) gshA 3724369..3725925 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  HW42_RS18580 (HW42_18040) yqaA 3725998..3726426 (-) 429 WP_001287457.1 YqaA family protein -
  HW42_RS18585 (HW42_18045) yqaB 3726423..3726989 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HW42_RS18615 (HW42_18075) csrA 3728447..3728632 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=111486 HW42_RS18570 WP_001130211.1 3723704..3724219(-) (luxS) [Escherichia coli strain RM9387]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=111486 HW42_RS18570 WP_001130211.1 3723704..3724219(-) (luxS) [Escherichia coli strain RM9387]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment