Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ABR2090_RS16395 Genome accession   NZ_LN868200
Coordinates   3405653..3407881 (+) Length   742 a.a.
NCBI ID   WP_000156662.1    Uniprot ID   -
Organism   Acinetobacter baumannii isolate R2090     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3400653..3412881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR2090_RS16370 (ABR2090_3298) lnt 3401104..3402663 (+) 1560 WP_001203096.1 apolipoprotein N-acyltransferase -
  ABR2090_RS16375 (ABR2090_3299) - 3402665..3403003 (-) 339 WP_000434938.1 tRNA-binding protein -
  ABR2090_RS16380 (ABR2090_3300) - 3403148..3403492 (-) 345 WP_000643174.1 hypothetical protein -
  ABR2090_RS16385 (ABR2090_3301) gspG 3403760..3404275 (-) 516 WP_000784786.1 type II secretion system major pseudopilin GspG -
  ABR2090_RS16390 (ABR2090_3302) gspF 3404299..3405504 (-) 1206 WP_005065941.1 type II secretion system inner membrane protein GspF -
  ABR2090_RS16395 (ABR2090_3303) priA 3405653..3407881 (+) 2229 WP_000156662.1 primosomal protein N' Machinery gene
  ABR2090_RS16400 (ABR2090_3304) - 3407958..3409799 (+) 1842 WP_000008979.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  ABR2090_RS16405 (ABR2090_3305) - 3409965..3410840 (+) 876 WP_001281765.1 Hsp33 family molecular chaperone HslO -
  ABR2090_RS16410 (ABR2090_3306) - 3410979..3411590 (+) 612 WP_001105725.1 LysE family translocator -
  ABR2090_RS16415 (ABR2090_3307) - 3411741..3412697 (+) 957 WP_001107924.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83803.52 Da        Isoelectric Point: 8.5630

>NTDB_id=1114836 ABR2090_RS16395 WP_000156662.1 3405653..3407881(+) (priA) [Acinetobacter baumannii isolate R2090]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYERAHVGSRVAISFGRQNLIGIITEKVDPSESFTGTFQLKAISDLL
DEQPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVEALLKRSGKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTLNEDQKKATQYVVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=1114836 ABR2090_RS16395 WP_000156662.1 3405653..3407881(+) (priA) [Acinetobacter baumannii isolate R2090]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTACATCTGTACGACACTTTTGA
CTATACACTCACCCAAGCACAATATGAACGGGCTCATGTAGGCTCACGCGTCGCTATTTCATTTGGACGCCAAAATCTGA
TTGGCATCATTACTGAAAAAGTTGACCCAAGTGAATCATTTACAGGCACCTTTCAGCTTAAAGCCATTTCTGACCTTTTA
GACGAACAGCCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCTGCCCAGTATTACCAATTTCCAATTGGCGA
GGTCATGCAAACCGCCCTACCCGCATTATTGCGTCAGGGCAAACCAATGGATGTTTTGTTCCATCTTTGGAAAATCACAC
CATGTGATAATGTTGAAGCACTTCTTAAACGTTCTGGTAAGCAACAAGACGCGTATCAAATTTTAAAATTACACCCTGCC
GGAACTACAGAGAATATTCTTAATTTAAGTGGTGTAGAAACAGCTACGCTTAAAGCACTTCAAAAGAAAGGACTAGTTGA
CTGTACGCTTGAACCACACGACTTTAGCCCATCGCCTGTTCAATTGGCACAAATGCCGCTCACGCTAAATGAAGACCAAA
AGAAAGCAACTCAGTACGTCGTAAACGCACAGCATCAATACCAAGCATTTTTATTAGATGGTTTAACAGGAAGTGGTAAA
ACTGAAGTTTATTTGCACATCATGCATGAAGTACTAAAGCAAGGTAAGCAAGTACTGGTATTAGTTCCTGAAATTGGTTT
AACCCCTCAAACCATTTCGCGCTTTAAGTCTCGTTTTAACTGCGACATTGCTTTATTACATTCGGGGCTAAATGACTCTA
AACGCCTACAGGCATGGCAACAAGCACAGACTGGAAAGGCCTCTATTATTTTAGGAACACGTTCAGCCATTTATACCCCG
CTGCCACGTTTGGGCCTGATCATTTTAGATGAAGAACACGACCTGTCTTATAAACAACAAGAAGGTTTCCGTTACCATGC
TCGTGATGTCGCGCTTTATCGAGGACATTTACAAGGCTGTCCTGTTCTTTTAGGTTCGGCAACCCCAAGCATTGACAGTT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCGCTTCAGCTGAACCAACGTGCAGGCCATGCGCTTTTACCAAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGTATTAGTCAGCCTTTAATCGAACAGATTAAAAATACCTTGGCAAG
AAAAGAACAGGTTTTAATTTTTTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCGCATTGTGATGCGCATTTTACGTTGCACACTCAGCCTTATTCTTACTTACATTGCCACCACTGTGGCACCGTT
CATCGCTTGCCAGACCACTGCCCTGAGTGTCAGCAAAAAAGCCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTCCCAGATCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAACAAAATAAACCTTCGATTTTGCTCGGTACTCAAATGTTGGCAAAGGGTCACCATTTTCCA
CATGTGACCTTGGTTGCTATTTTAGATATTGATGCAGGTTTACTCAGTGTCGATATTCGAGCGCCAGAGCGTACTGCTCA
ATTGATTGTACAAGTGGCTGGTCGTGCAGGCCGCGGAGAACATAAGGGTCATGTTTATTTACAGACTTTAAGGCCAGATC
ATCCTTTACTCACCACACTCATCGAAAAAGATTATCGGGCAGTCGCGAAACAAACATTGGCTGAGCGTAAAGTTGCATTA
CTGCCGCCTTATCGCTATGCCGTACTTATACGCGCTGAATCGAAAGATCGTGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATTGCAGGTGACATTGTTGATATCTGGGGGCCAATTCCAGCGCCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAA
TTGGTTCATGCGCCAAGACAGCATCAACTCAGACTCTCAATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment