Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABCIP7010_RS01170 Genome accession   NZ_LN865143
Coordinates   252903..254471 (-) Length   522 a.a.
NCBI ID   WP_001160341.1    Uniprot ID   -
Organism   Acinetobacter baumannii isolate CIP70.10     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 247903..259471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCIP7010_RS01155 (ABCIP7010_0237) gpmI 248706..250253 (+) 1548 WP_000128745.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABCIP7010_RS01160 (ABCIP7010_0238) - 250269..251453 (+) 1185 WP_000939109.1 S41 family peptidase -
  ABCIP7010_RS01165 (ABCIP7010_0239) pilR 251457..252878 (-) 1422 WP_031966660.1 sigma-54 dependent transcriptional regulator Regulator
  ABCIP7010_RS01170 (ABCIP7010_0240) pilS 252903..254471 (-) 1569 WP_001160341.1 PAS domain-containing sensor histidine kinase Regulator
  ABCIP7010_RS01175 (ABCIP7010_0241) - 254482..255117 (-) 636 WP_000633799.1 response regulator -
  ABCIP7010_RS01180 (ABCIP7010_0242) pbpG 255330..256376 (+) 1047 WP_003384760.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ABCIP7010_RS01185 (ABCIP7010_0243) thrC 256483..257622 (-) 1140 WP_000063593.1 threonine synthase -
  ABCIP7010_RS01190 (ABCIP7010_0244) - 257678..258979 (-) 1302 WP_000805827.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59261.73 Da        Isoelectric Point: 6.4995

>NTDB_id=1114737 ABCIP7010_RS01170 WP_001160341.1 252903..254471(-) (pilS) [Acinetobacter baumannii isolate CIP70.10]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQTDNSLQQPALYSYTLLGYSLLSLVQLLCFKFIATQATRQ
LILFFIVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVVSNPAACSLLGIPPQFANE
KYPLAKWHTDLFEILKFGDLKEGDRFIFESRLSAYSINIKVQHLLVPQQTLTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLRHMIGKQTKRIDSIVQDTLGLARSERTHPIQIDVRHFIDTLLEEDLFDVK
HSIQLKISDSSLKFLFDEKQLRQVMINLVRNALRHNATDSPYITINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=1114737 ABCIP7010_RS01170 WP_001160341.1 252903..254471(-) (pilS) [Acinetobacter baumannii isolate CIP70.10]
ATGCAATTTCCCTTAAATTCATCCTTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGCTTATACCGTCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCGCAAACTGATAACAGTTTGCAGCAACCTGCCTTATATTCCT
ACACACTACTCGGCTATTCGCTCTTAAGTCTTGTTCAGCTGTTATGCTTTAAATTTATTGCCACTCAAGCCACGCGACAG
CTTATTTTATTTTTTATTGTTGATATTATTTGTCTGAGTTTACTAACTTTTTCTGTGGGTGAACCAAATTTACAACTCAG
CTTACTCTATGTAATTGCCATCTTTACCTCGGCGATTTTACTCAGCGCAAGAATGTCTTTGCTGATTACATTGCTTGCGG
TTATCGCTGTTATTTACCAACGATTTGTAGGTAGTCTATTTGACTATAACAATCTAAATACTATTGGTAATAGCGCTCTC
TTAGCTTTTTTATTTTTTGTGGTTCACGGTATTGGCCAAATTGCTGTGCAGCGCTTTAAATTACTTGAAGCACTCACCTT
TCACCAGTCAATTGAACTCTATCAACTCCAAAATATTAACCGTTATATCTTAGAACAAATTGAAGAAGGCTATTTAGTTC
TAGATGAGAATTACGACATCGTTGTCAGTAATCCTGCGGCCTGTTCACTCTTGGGTATTCCCCCTCAATTTGCCAATGAA
AAATATCCTTTAGCAAAGTGGCATACCGATTTATTTGAAATTTTAAAGTTTGGCGACTTAAAAGAAGGTGACCGATTCAT
TTTTGAGTCTCGGCTATCGGCGTACTCCATCAACATTAAAGTGCAACACCTTTTGGTCCCACAACAAACGCTAACCCTGC
TCATTTTACAAGATGCCCAACAAATTAATCAGCAAGCACAACAGCTTAAGCTTGCTGCGCTAGGGCAACTCTCAGCAAGT
ATTGCACATGAGATCCGCAATCCTCTCGCTGCAATCGTACAAGCAAATGAGTTACTGAAAGATAGCGATCCAGAACAACA
AAATACTTTGCGTCATATGATTGGCAAACAAACCAAACGCATTGATAGTATTGTTCAAGATACTTTAGGGCTTGCTCGTA
GCGAAAGAACACATCCTATCCAGATCGATGTAAGACACTTCATAGATACATTGCTCGAAGAAGATTTATTTGATGTTAAA
CATTCAATTCAACTTAAAATTTCGGATAGTTCTTTAAAATTTTTATTTGATGAAAAACAATTAAGACAAGTCATGATCAA
TCTGGTGAGAAATGCTTTACGGCATAATGCCACCGACTCGCCGTACATTACGATCAACATTCATTCACAGACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCGAACCATGCAAAGCTCACCTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

99.234

100

0.992

Multiple sequence alignment