Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   SABB155_RS10385 Genome accession   NZ_LN854556
Coordinates   2064013..2064729 (+) Length   238 a.a.
NCBI ID   WP_061745636.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BB155     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2059013..2069729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SABB155_RS10355 (SABB155_19000) - 2059273..2059899 (+) 627 WP_054189595.1 nitroreductase family protein -
  SABB155_RS10360 (SABB155_19010) - 2060220..2061005 (+) 786 WP_054189594.1 carbon-nitrogen family hydrolase -
  SABB155_RS14950 hld 2061601..2061681 (-) 81 WP_000046022.1 delta-hemolysin -
  SABB155_RS10370 (SABB155_19030) - 2061971..2062540 (+) 570 WP_054189593.1 accessory gene regulator AgrB -
  SABB155_RS10375 (SABB155_19040) agrD 2062537..2062677 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  SABB155_RS10380 (SABB155_19050) agrC 2062702..2063994 (+) 1293 WP_054189592.1 quorum-sensing sensor histidine kinase AgrC -
  SABB155_RS10385 (SABB155_19060) agrA 2064013..2064729 (+) 717 WP_061745636.1 quorum-sensing response regulator AgrA Regulator
  SABB155_RS10390 - 2064801..2064909 (+) 109 Protein_1983 hypothetical protein -
  SABB155_RS10395 (SABB155_19070) - 2065106..2066065 (-) 960 WP_054189590.1 carbohydrate kinase family protein -
  SABB155_RS10400 (SABB155_19080) - 2066062..2067546 (-) 1485 WP_054189589.1 sucrose-6-phosphate hydrolase -
  SABB155_RS10405 (SABB155_19090) - 2067695..2068645 (-) 951 WP_061745637.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27981.01 Da        Isoelectric Point: 6.3001

>NTDB_id=1114677 SABB155_RS10385 WP_061745636.1 2064013..2064729(+) (agrA) [Staphylococcus aureus strain BB155]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDNRFFRCHNSFVVNRHNIEYIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1114677 SABB155_RS10385 WP_061745636.1 2064013..2064729(+) (agrA) [Staphylococcus aureus strain BB155]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACCGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGATCCA
GTTGGTAACATTATATTTGTTACGAGTCACAGTGAACTTACCTATTTAACTTTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCCGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACTAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATAATCGCTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATATATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.16

100

0.992

Multiple sequence alignment