Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   A66_RS12635 Genome accession   NZ_LN847353
Coordinates   1646360..1647181 (-) Length   273 a.a.
NCBI ID   WP_078372245.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain A66     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 1641360..1652181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A66_RS08620 (A66_01717) - 1641849..1642166 (-) 318 WP_000615774.1 thioredoxin family protein -
  A66_RS08625 (A66_01718) - 1642163..1642462 (-) 300 WP_001818001.1 DUF4651 domain-containing protein -
  A66_RS12800 (A66_01719) - 1642556..1642687 (+) 132 WP_001811306.1 hypothetical protein -
  A66_RS13015 - 1642799..1642994 (-) 196 Protein_1672 cell wall-binding protein -
  A66_RS08640 (A66_01720) - 1643155..1643829 (-) 675 WP_000725720.1 LiaF transmembrane domain-containing protein -
  A66_RS08645 (A66_01721) - 1643834..1644280 (-) 447 Protein_1674 LytTR family DNA-binding domain-containing protein -
  A66_RS08650 (A66_01722) - 1644394..1644897 (-) 504 WP_000800942.1 phosphatase PAP2 family protein -
  A66_RS08655 (A66_01723) - 1644894..1645256 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  A66_RS12630 (A66_01724) rcrQ 1645322..1646353 (-) 1032 WP_053039749.1 ABC transporter ATP-binding protein Regulator
  A66_RS12635 (A66_01725) rcrP 1646360..1647181 (-) 822 WP_078372245.1 ABC transporter permease Regulator
  A66_RS08670 (A66_01726) - 1647198..1647669 (-) 472 Protein_1679 MarR family winged helix-turn-helix transcriptional regulator -
  A66_RS08675 (A66_01727) - 1647793..1648509 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  A66_RS08680 (A66_01728) ply 1649390..1650805 (-) 1416 WP_001284359.1 cholesterol-dependent cytolysin pneumolysin -
  A66_RS08685 (A66_01729) - 1650816..1651226 (-) 411 WP_000595757.1 hypothetical protein -
  A66_RS08690 (A66_01730) - 1651219..1651827 (-) 609 WP_000083614.1 hypothetical protein -

Sequence


Protein


Download         Length: 273 a.a.        Molecular weight: 30574.25 Da        Isoelectric Point: 6.9509

>NTDB_id=1114615 A66_RS12635 WP_078372245.1 1646360..1647181(-) (rcrP) [Streptococcus pneumoniae strain A66]
MILLAILFTCFLVYLELKVPTYISKITDLLGSQETNLDELWQPASMMMGMSFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTCGPIMAIWAIGKILGHSEYWLWAVLVAVIINVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMSILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIVFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=1114615 A66_RS12635 WP_078372245.1 1646360..1647181(-) (rcrP) [Streptococcus pneumoniae strain A66]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTTGGTCTATCTAGAGTTGAAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGAAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGTCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGTGTGGTCCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGCAGTGATTATCAACGTCCTGATGACGACCGTT
TTGATGACGTTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGCTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGTCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTG
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGT
TTTCATGTCTTATGCTATGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

58.596

100

0.612


Multiple sequence alignment