Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A66_RS12630 Genome accession   NZ_LN847353
Coordinates   1645322..1646353 (-) Length   343 a.a.
NCBI ID   WP_053039749.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain A66     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1640322..1651353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A66_RS08610 (A66_01715) - 1640404..1641165 (-) 762 WP_050215706.1 SDR family NAD(P)-dependent oxidoreductase -
  A66_RS08615 (A66_01716) ytpR 1641207..1641833 (-) 627 WP_000578289.1 YtpR family tRNA-binding protein -
  A66_RS08620 (A66_01717) - 1641849..1642166 (-) 318 WP_000615774.1 thioredoxin family protein -
  A66_RS08625 (A66_01718) - 1642163..1642462 (-) 300 WP_001818001.1 DUF4651 domain-containing protein -
  A66_RS12800 (A66_01719) - 1642556..1642687 (+) 132 WP_001811306.1 hypothetical protein -
  A66_RS13015 - 1642799..1642994 (-) 196 Protein_1672 cell wall-binding protein -
  A66_RS08640 (A66_01720) - 1643155..1643829 (-) 675 WP_000725720.1 LiaF transmembrane domain-containing protein -
  A66_RS08645 (A66_01721) - 1643834..1644280 (-) 447 Protein_1674 LytTR family DNA-binding domain-containing protein -
  A66_RS08650 (A66_01722) - 1644394..1644897 (-) 504 WP_000800942.1 phosphatase PAP2 family protein -
  A66_RS08655 (A66_01723) - 1644894..1645256 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  A66_RS12630 (A66_01724) rcrQ 1645322..1646353 (-) 1032 WP_053039749.1 ABC transporter ATP-binding protein Regulator
  A66_RS12635 (A66_01725) rcrP 1646360..1647181 (-) 822 WP_078372245.1 ABC transporter permease Regulator
  A66_RS08670 (A66_01726) - 1647198..1647669 (-) 472 Protein_1679 MarR family winged helix-turn-helix transcriptional regulator -
  A66_RS08675 (A66_01727) - 1647793..1648509 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  A66_RS08680 (A66_01728) ply 1649390..1650805 (-) 1416 WP_001284359.1 cholesterol-dependent cytolysin pneumolysin -
  A66_RS08685 (A66_01729) - 1650816..1651226 (-) 411 WP_000595757.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37922.10 Da        Isoelectric Point: 4.4764

>NTDB_id=1114614 A66_RS12630 WP_053039749.1 1645322..1646353(-) (rcrQ) [Streptococcus pneumoniae strain A66]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGINVQDYDFSATAHAGQKVAIVGSTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=1114614 A66_RS12630 WP_053039749.1 1645322..1646353(-) (rcrQ) [Streptococcus pneumoniae strain A66]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTACAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTATCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGTCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCACGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(68-118)

ABC transporter (ABC_tran)

(120-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.357

65.306

0.525
  rcrP Streptococcus mutans UA159

38.15

100

0.385

Multiple sequence alignment