Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CCOS191_RS23450 Genome accession   NZ_LN847264
Coordinates   5250495..5251862 (-) Length   455 a.a.
NCBI ID   WP_046857208.1    Uniprot ID   A0A2V4HF15
Organism   Pseudomonas sp. CCOS 191     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5245495..5256862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCOS191_RS23435 (CCOS191_4654) - 5245990..5248743 (-) 2754 WP_046857205.1 TonB-dependent receptor -
  CCOS191_RS23440 (CCOS191_4655) - 5248861..5249850 (-) 990 WP_046857206.1 FecR domain-containing protein -
  CCOS191_RS23445 (CCOS191_4656) - 5249919..5250422 (-) 504 WP_046857207.1 RNA polymerase sigma factor -
  CCOS191_RS23450 (CCOS191_4657) radA 5250495..5251862 (-) 1368 WP_046857208.1 DNA repair protein RadA Machinery gene
  CCOS191_RS23455 (CCOS191_4658) mscL 5252041..5252454 (+) 414 WP_046857209.1 large-conductance mechanosensitive channel protein MscL -
  CCOS191_RS23460 (CCOS191_4659) - 5252523..5253299 (-) 777 WP_046857210.1 ferredoxin--NADP reductase -
  CCOS191_RS23465 (CCOS191_4660) - 5253516..5254220 (+) 705 WP_046857211.1 autoinducer binding domain-containing protein -
  CCOS191_RS23470 (CCOS191_4661) - 5254319..5255443 (+) 1125 WP_046857212.1 methyltransferase -
  CCOS191_RS23475 (CCOS191_4662) - 5255499..5255639 (-) 141 WP_023630574.1 DUF2474 domain-containing protein -
  CCOS191_RS23480 (CCOS191_4663) cydB 5255652..5256659 (-) 1008 WP_046857213.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48770.18 Da        Isoelectric Point: 6.8985

>NTDB_id=1114536 CCOS191_RS23450 WP_046857208.1 5250495..5251862(-) (radA) [Pseudomonas sp. CCOS 191]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVESMIESGGAAAPSGRTGWTGQQAQIKTLAEVSVEEIPRFTTSSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVQMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA
TARQEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1114536 CCOS191_RS23450 WP_046857208.1 5250495..5251862(-) (radA) [Pseudomonas sp. CCOS 191]
ATGGCCAAGGCCAAGCGTTTGTATGGCTGCACCGAGTGCGGCGCGACCTTCCCCAAGTGGGCCGGGCAGTGTGGCGAGTG
CGGGGCCTGGAACACCCTGGTCGAGAGCATGATCGAAAGCGGCGGCGCCGCGGCACCGAGCGGGCGTACCGGCTGGACCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTGAGCGTCGAGGAGATCCCGCGCTTCACCACCAGCAGCACCGAACTC
GACCGCGTGCTGGGCGGCGGCCTGGTGGATGGATCGGTGGTGCTGATCGGGGGCGATCCGGGTATCGGCAAATCGACCAT
CCTCTTGCAGACCCTGTGCAACATCGCCGTGCAGATGCCGGCGCTGTATGTCACCGGCGAGGAGTCGCAGCAGCAGGTGG
CCATGCGCTCCCGGCGCCTGGGCCTGCCCCAGGACCAGCTCAAGGTCATGACTGAGACCTGCATCGAGACCATCATCGCC
ACCGCGCGCCAGGAAAAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAACAACTGCAGTCGGCGCC
GGGTGGCGTGGCCCAGGTGCGCGAGAGCACGGCATTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGTCATGTCACCAAGGAAGGCTCGTTGGCAGGTCCTCGGGTGCTCGAGCACATGGTCGACACGGTGCTGTATTTCGAG
GGCGAGTCCGATGGCCGCCTGCGCCTGCTGCGCGCAGTGAAGAACCGCTTTGGCGCGGTCAACGAGCTGGGCGTGTTCGG
CATGACCGACCGCGGCCTCAAGGAAGTCTCCAATCCGTCGGCGATCTTCCTCAATCGCACCCAGGAAGAGGTGCCCGGCA
GCGTGGTCATGGCCACCTGGGAGGGCACCCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACGACAGCCACCTGGCC
AACCCGCGACGGGTGACCCTGGGTCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGACACGGTGGCAT
CCCCACCCATGACCAGGACGTGTTCCTCAACGTCGTCGGCGGGGTGAAGGTGCTCGAGACTGCCTCCGACCTCGCATTGC
TGGCTGCGGTGATGTCCAGCCTGCGCAATCGTCCGCTGGCCCATGGCCTGCTGGTGTTCGGCGAGATCGGCCTGTCGGGC
GAGGTGCGCCCGGTGCCCAGTGGCCAGGAGCGTTTGAAAGAAGCGGCAAAACATGGCTTCAAGCGGGCCATCGTGCCCAA
GGGCAACGCGCCGAAAGAGGCGCCCGCCGGGTTGCAGGTGATTGCCGTGACCCGTCTGGAACAGGCGCTGGATGCATTGT
TCGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)

AAA domain (AAA_25)

(72-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V4HF15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.488
  radA Streptococcus pneumoniae Rx1

46.187

100

0.466
  radA Streptococcus pneumoniae D39

46.187

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.187

100

0.466
  radA Streptococcus pneumoniae R6

46.187

100

0.466
  radA Streptococcus mitis NCTC 12261

45.969

100

0.464
  radA Streptococcus mitis SK321

46.154

100

0.462

Multiple sequence alignment