Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   PRIO_RS13125 Genome accession   NZ_LN831776
Coordinates   3218966..3220717 (-) Length   583 a.a.
NCBI ID   WP_046502842.1    Uniprot ID   A0A0E3WHC8
Organism   Paenibacillus riograndensis SBR5 isolate SBR5(T)     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3213966..3225717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PRIO_RS13105 (PRIO_2655) - 3214214..3215470 (+) 1257 WP_046502835.1 MFS transporter -
  PRIO_RS13110 (PRIO_2656) - 3215471..3216082 (+) 612 WP_020429863.1 sugar O-acetyltransferase -
  PRIO_RS13115 (PRIO_2657) murI 3216331..3217119 (+) 789 WP_046502839.1 glutamate racemase -
  PRIO_RS13120 (PRIO_2658) rcrQ 3217206..3218966 (-) 1761 WP_020432544.1 ABC transporter ATP-binding protein Regulator
  PRIO_RS13125 (PRIO_2659) rcrP 3218966..3220717 (-) 1752 WP_046502842.1 ABC transporter ATP-binding protein Regulator
  PRIO_RS13130 (PRIO_2660) - 3220876..3221931 (-) 1056 WP_020432536.1 HAMP domain-containing sensor histidine kinase -
  PRIO_RS13135 (PRIO_2661) - 3221919..3222602 (-) 684 WP_020432534.1 response regulator transcription factor -
  PRIO_RS13140 (PRIO_2662) - 3222698..3223537 (-) 840 WP_020432530.1 YheC/YheD family protein -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 63793.08 Da        Isoelectric Point: 6.3202

>NTDB_id=1114429 PRIO_RS13125 WP_046502842.1 3218966..3220717(-) (rcrP) [Paenibacillus riograndensis SBR5 isolate SBR5(T)]
MVKILKYLNPKEWALFGVSFLFIVAQVWLDLELPDYMSEITRLVQTPGSEMSDIIATGGWMLLCALGSLATSIVVAGIAA
RIAANFSSRLRSKLFDKVQSFSMEEINNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWALLKITGKSWEWSLT
TGIAVGVLILIVGICVVLVLPKFQKLQQLTDNLNRVSRENLTGLRIIRAYNAEGYQENKFSEANNVLTRTNLFANNVLAV
LMPSITLIMSGLSLAIYWVGASLIQSADMGAKMGLFSDMIVFSSYAIQVVMAFMMLIMIFILMPRAHVSAKRINEVLDTK
PSLMNGSLTASSSKLAGEVEFRKVSFKYPDADDYVLKDISFTAKTGETVAFIGSTGCGKSTVVNLIPRFYDATEGEVLVN
GVNVNQYEESALRNKMGYVSQKAVLFGGTVTSNIAFGDNGSDASAEVVDAVYISQASDFVEKMEGSYDAHIAQGGTNLSG
GQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKGARGTTMLIVAQRIGTIKDADKIIVLEEGRIAGMGTHE
ELMDTCSVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=1114429 PRIO_RS13125 WP_046502842.1 3218966..3220717(-) (rcrP) [Paenibacillus riograndensis SBR5 isolate SBR5(T)]
ATGGTCAAAATACTCAAATACTTGAACCCGAAAGAATGGGCTCTCTTCGGTGTCAGCTTCCTCTTCATCGTTGCCCAGGT
GTGGCTGGATCTGGAATTGCCCGATTATATGAGCGAGATTACCCGGCTGGTCCAGACACCGGGAAGCGAAATGAGCGACA
TCATCGCCACCGGCGGCTGGATGCTGCTCTGTGCGCTCGGCAGTCTGGCAACCTCAATCGTTGTAGCCGGCATCGCCGCA
AGAATCGCCGCCAACTTCTCTTCCCGGCTCCGTTCCAAGCTGTTCGATAAGGTGCAGTCCTTCTCCATGGAGGAAATCAA
CAACTTCTCGACAGCCAGCCTGATTACCCGTTCGACCAACGATATTACCCAGGTGCAGATGCTGATTGTCATCGGATTGC
AGCTGCTGGTGAAGGCTCCGATCCTTGCGGTATGGGCGCTGCTCAAGATTACCGGCAAGAGCTGGGAGTGGTCGCTGACG
ACCGGCATTGCCGTCGGTGTGCTTATCCTGATCGTCGGAATTTGTGTCGTGCTCGTGCTGCCGAAGTTCCAGAAGCTGCA
GCAATTGACGGATAACCTGAACCGGGTGTCCCGAGAAAATCTGACCGGCCTGCGGATCATCCGTGCATATAATGCTGAAG
GCTATCAGGAAAACAAGTTCAGTGAAGCCAACAATGTGCTTACCCGCACGAACCTGTTCGCAAACAACGTACTGGCCGTG
CTTATGCCCAGCATCACCCTGATTATGAGCGGTCTGAGCCTCGCCATTTATTGGGTAGGCGCATCCCTGATTCAATCCGC
CGATATGGGTGCCAAAATGGGATTGTTCTCGGATATGATCGTCTTCTCCTCCTATGCCATTCAGGTGGTTATGGCCTTTA
TGATGCTCATCATGATCTTCATTCTGATGCCCCGCGCCCATGTCTCGGCTAAACGGATCAACGAAGTGCTGGATACCAAG
CCGAGCCTGATGAACGGCTCGCTGACCGCCTCATCTTCCAAGCTTGCCGGCGAGGTTGAATTCAGAAAGGTCAGCTTTAA
ATATCCCGATGCGGATGATTATGTCCTCAAAGACATCAGCTTTACAGCCAAAACAGGCGAAACCGTCGCCTTCATCGGTT
CGACCGGCTGCGGCAAAAGCACTGTCGTTAACCTCATCCCCCGCTTCTATGATGCTACTGAAGGCGAGGTGCTTGTCAAC
GGGGTCAATGTCAATCAATACGAAGAAAGCGCGCTCCGCAACAAGATGGGTTATGTCTCGCAGAAGGCGGTGTTGTTCGG
CGGAACCGTGACTTCCAATATCGCCTTCGGCGACAACGGCAGTGATGCTTCCGCTGAAGTGGTAGATGCGGTGTATATCT
CCCAGGCTTCAGATTTCGTCGAAAAAATGGAAGGCAGCTATGATGCGCACATCGCCCAGGGCGGCACTAATCTGTCCGGC
GGCCAGAAGCAGCGGCTATCCATTGCCCGGGCGATCGCCCGCCGTCCGGAAATTCTGATCTTCGACGATTCCTTCTCCGC
GCTTGATTACAAGACGGACCGCAAACTGCGCAGTGAACTGAAAAAGGGTGCCCGCGGAACCACAATGCTGATTGTCGCCC
AGCGGATCGGCACCATTAAGGATGCAGACAAAATTATCGTGCTGGAAGAAGGCCGCATCGCCGGCATGGGCACACATGAG
GAATTAATGGACACCTGCAGCGTTTATCAGGAGATTGCTTATTCGCAGCTGTCCAAGGAGGAATTGGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(356-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E3WHC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.349

100

0.535

Multiple sequence alignment