Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PRIO_RS13120 Genome accession   NZ_LN831776
Coordinates   3217206..3218966 (-) Length   586 a.a.
NCBI ID   WP_020432544.1    Uniprot ID   A0A0E4H9G2
Organism   Paenibacillus riograndensis SBR5 isolate SBR5(T)     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3208593..3217119 3217206..3218966 flank 87


Gene organization within MGE regions


Location: 3208593..3218966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PRIO_RS13070 (PRIO_2647) - 3208593..3208982 (-) 390 WP_046502810.1 hypothetical protein -
  PRIO_RS13075 - 3209691..3209963 (+) 273 WP_046502815.1 hypothetical protein -
  PRIO_RS35525 - 3210121..3210414 (+) 294 WP_167345620.1 hypothetical protein -
  PRIO_RS13080 (PRIO_2649) - 3210673..3210993 (+) 321 WP_046502820.1 DsbA family protein -
  PRIO_RS13085 (PRIO_2650) - 3211405..3211776 (-) 372 WP_046502825.1 carboxymuconolactone decarboxylase family protein -
  PRIO_RS13090 (PRIO_2652) - 3211970..3212269 (-) 300 WP_020429858.1 hypothetical protein -
  PRIO_RS13095 (PRIO_2653) - 3212382..3213014 (-) 633 WP_231869881.1 histidine phosphatase family protein -
  PRIO_RS13100 (PRIO_2654) - 3213183..3214190 (+) 1008 WP_231869882.1 ROK family protein -
  PRIO_RS13105 (PRIO_2655) - 3214214..3215470 (+) 1257 WP_046502835.1 MFS transporter -
  PRIO_RS13110 (PRIO_2656) - 3215471..3216082 (+) 612 WP_020429863.1 sugar O-acetyltransferase -
  PRIO_RS13115 (PRIO_2657) murI 3216331..3217119 (+) 789 WP_046502839.1 glutamate racemase -
  PRIO_RS13120 (PRIO_2658) rcrQ 3217206..3218966 (-) 1761 WP_020432544.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64207.06 Da        Isoelectric Point: 6.0208

>NTDB_id=1114428 PRIO_RS13120 WP_020432544.1 3217206..3218966(-) (rcrQ) [Paenibacillus riograndensis SBR5 isolate SBR5(T)]
MTANNKQPGTWSKLIRYCRNHIPVVLAAVLSAAAGTVLTLLGPDQLSEMTDLITQGIAAGIDMEAIASIGLYLVIIYGIS
AVLSLLQGLIMSSVTQKVSKRLRGDLSHKMNRLPISYYNKSTTGDILSRVTNDVDTIGQALNQSVGTLVTALSLFVGSIV
MMLKTNWIMTVTAVVATIIGFGLMTVIMKKSQKYFQSQQEYLGKINGHVEEVYTGHTVVKAYNAEAQMRGAFEDLNRNLK
NSVFKAQFLSGMMMPIMMFIGNLGFVAVCVVGAVLATNGDISFGVIVAFMMYVRFFTQPLSQIAQAAQSLQSASAASKRV
FEFLEAEEMDDESQKTAQLKAATGKVKFEHVQFAYEGTDNLVIRDFSTEVQPGQKIAIVGPTGAGKTTLVNLLIRFNELT
GGEIYIDDTPISSLTRENIHDQFCMVLQDTWLFEGTIRENLIYNQTGITDQDIQEACKSVGLHHFIQTLSAGYDTVLNDK
VNLSAGQKQQLTIARAMLKNAPMLILDEATSSVDTRTELLIQQAMDRLMEGRTSFVIAHRLSTIKNADVILVLKDGDILE
SGSHSELLAKNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=1114428 PRIO_RS13120 WP_020432544.1 3217206..3218966(-) (rcrQ) [Paenibacillus riograndensis SBR5 isolate SBR5(T)]
ATGACTGCAAACAACAAACAACCCGGCACCTGGAGCAAGCTTATCCGCTATTGCCGTAATCATATTCCTGTGGTGCTGGC
AGCCGTGCTCAGTGCGGCCGCCGGAACTGTGTTGACCTTGCTTGGTCCGGATCAGCTCTCCGAGATGACGGACCTGATTA
CCCAGGGCATCGCTGCCGGAATCGATATGGAGGCGATCGCTTCTATCGGATTGTATCTGGTCATCATCTACGGAATCAGT
GCTGTGCTCTCTCTGCTGCAGGGACTCATCATGTCGTCGGTGACGCAAAAGGTCTCCAAACGTTTAAGAGGCGATCTGTC
GCACAAAATGAACAGACTGCCGATCTCTTATTACAATAAATCAACAACCGGCGACATTCTCTCCCGGGTAACCAATGATG
TGGATACGATCGGGCAAGCCTTGAATCAAAGCGTCGGTACGCTGGTCACCGCCCTCTCGCTGTTCGTCGGGTCCATCGTG
ATGATGCTCAAGACGAACTGGATCATGACCGTTACCGCAGTTGTCGCTACAATCATCGGTTTTGGCCTGATGACGGTTAT
TATGAAGAAGTCCCAGAAGTATTTTCAGAGCCAGCAAGAGTATCTGGGCAAAATCAACGGCCATGTGGAGGAAGTCTACA
CCGGACATACTGTTGTAAAAGCCTACAATGCCGAAGCGCAGATGCGCGGCGCATTTGAAGACCTGAACCGCAATCTGAAA
AACAGCGTGTTCAAGGCGCAGTTCCTCTCCGGCATGATGATGCCGATCATGATGTTTATCGGGAATTTGGGTTTCGTGGC
CGTCTGTGTGGTTGGGGCTGTACTGGCAACGAACGGAGATATTTCCTTCGGGGTCATCGTCGCCTTTATGATGTACGTCC
GTTTCTTTACCCAGCCTCTCTCGCAGATCGCCCAGGCTGCGCAGAGCCTGCAATCGGCTTCGGCGGCCAGCAAGCGCGTC
TTTGAATTTTTAGAGGCCGAGGAGATGGACGATGAAAGCCAAAAGACGGCACAACTGAAAGCTGCAACGGGCAAAGTGAA
GTTCGAGCACGTGCAGTTTGCTTACGAGGGTACGGATAATCTGGTGATCAGGGACTTCTCCACCGAGGTTCAGCCGGGGC
AAAAGATCGCCATCGTCGGCCCGACCGGCGCCGGCAAAACCACGCTCGTCAATCTGCTCATCCGCTTCAATGAACTCACC
GGCGGAGAGATTTATATCGACGATACGCCGATTAGCAGCCTGACCCGGGAGAACATCCATGACCAGTTCTGTATGGTGCT
GCAGGACACCTGGCTGTTTGAAGGAACGATCCGGGAGAACCTGATATACAACCAAACCGGCATCACCGATCAAGACATTC
AGGAGGCATGCAAATCGGTAGGCCTGCACCACTTCATCCAGACCTTAAGCGCCGGCTACGATACGGTACTGAACGACAAA
GTCAACCTGTCCGCCGGCCAAAAACAACAGTTGACCATCGCCCGCGCCATGCTTAAAAATGCGCCGATGCTCATTCTCGA
CGAGGCGACCAGTTCGGTCGATACCCGGACAGAGCTGCTGATCCAGCAGGCGATGGACCGGCTGATGGAAGGCCGGACAT
CCTTTGTCATCGCCCACCGGCTCTCGACCATCAAGAATGCCGATGTCATTCTTGTGCTGAAGGACGGGGACATCCTGGAA
AGCGGAAGCCACAGCGAGCTGCTGGCCAAAAACGGCTTCTACGCCGAACTGTACAACAGCCAATTCGAGCAGGCTTCATA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(26-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E4H9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.207

98.976

0.556

Multiple sequence alignment