Detailed information NTG0111441

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: HW42_RS01220
• Genome accession: NZ_CP009104
• Coordinates: 244119..245144 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain RM9387
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 239119..250144

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HW42_RS01190 (HW42_01175)	zapB	239203..239448 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
HW42_RS01195 (HW42_01180)	rraA	239533..240018 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
HW42_RS01200 (HW42_01185)	menA	240111..241037 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
HW42_RS01205 (HW42_01190)	hslU	241104..242435 (-)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
HW42_RS01210 (HW42_01195)	hslV	242445..242975 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
HW42_RS01215 (HW42_01200)	ftsN	243068..244027 (-)	960	WP_071884990.1	cell division protein FtsN	-
HW42_RS01220 (HW42_01205)	cytR	244119..245144 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
HW42_RS01225 (HW42_01210)	priA	245300..247498 (-)	2199	WP_001395720.1	primosomal protein N'	Machinery gene
HW42_RS01230 (HW42_01215)	rpmE	247701..247913 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
HW42_RS01235 (HW42_01220)	yiiX	247974..248582 (-)	609	WP_000797344.1	YiiX family permuted papain-like enzyme	-
HW42_RS01240 (HW42_01225)	metJ	248766..249083 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=111441 HW42_RS01220 WP_000644904.1 244119..245144(-) (cytR) [Escherichia coli strain RM9387]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=111441 HW42_RS01220 WP_000644904.1 244119..245144(-) (cytR) [Escherichia coli strain RM9387]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTATCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628