Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   AT683_RS01825 Genome accession   NZ_LN831035
Coordinates   377643..377939 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain NCTC8143     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 372643..382939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT683_RS01815 (ERS450003_00360) - 374281..377322 (+) 3042 WP_058222155.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  AT683_RS01820 - 377429..377650 (+) 222 WP_038439526.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AT683_RS01825 (ERS450003_00361) HI0659 377643..377939 (+) 297 WP_005650837.1 helix-turn-helix transcriptional regulator Machinery gene
  AT683_RS01830 (ERS450003_00362) - 378123..380039 (+) 1917 WP_038440439.1 ABC transporter ATP-binding protein -
  AT683_RS01835 (ERS450003_00363) - 380049..380585 (+) 537 WP_011272152.1 type I DNA topoisomerase -
  AT683_RS01840 (ERS450003_00364) - 380601..381152 (+) 552 WP_011272151.1 Sua5/YciO/YrdC/YwlC family protein -
  AT683_RS01845 (ERS450003_00365) aroE 381156..381962 (+) 807 WP_011272150.1 shikimate dehydrogenase -
  AT683_RS01850 (ERS450003_00366) - 381974..382726 (+) 753 WP_011272149.1 DUF3800 domain-containing protein -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=1114267 AT683_RS01825 WP_005650837.1 377643..377939(+) (HI0659) [Haemophilus influenzae strain NCTC8143]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1114267 AT683_RS01825 WP_005650837.1 377643..377939(+) (HI0659) [Haemophilus influenzae strain NCTC8143]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGTCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment