Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   LACPI_RS11195 Genome accession   NZ_LN774769
Coordinates   2303709..2304761 (-) Length   350 a.a.
NCBI ID   WP_047916386.1    Uniprot ID   A0A0D6E074
Organism   Lactococcus piscium MKFS47     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2298709..2309761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LACPI_RS11175 (LACPI_2204) - 2299067..2299606 (-) 540 WP_047916382.1 cysteine hydrolase family protein -
  LACPI_RS11180 (LACPI_2205) - 2299715..2300119 (+) 405 WP_231858757.1 Lrp/AsnC family transcriptional regulator -
  LACPI_RS11185 (LACPI_2206) - 2300126..2300644 (-) 519 WP_047916384.1 NUDIX hydrolase -
  LACPI_RS11190 (LACPI_2207) adhE 2300851..2303451 (-) 2601 WP_047916385.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  LACPI_RS11195 (LACPI_2208) sepM 2303709..2304761 (-) 1053 WP_047916386.1 SepM family pheromone-processing serine protease Regulator
  LACPI_RS11200 (LACPI_2209) coaD 2304748..2305236 (-) 489 WP_047916387.1 pantetheine-phosphate adenylyltransferase -
  LACPI_RS11205 (LACPI_2210) rsmD 2305229..2305780 (-) 552 WP_047916388.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37874.78 Da        Isoelectric Point: 9.8130

>NTDB_id=1114003 LACPI_RS11195 WP_047916386.1 2303709..2304761(-) (sepM) [Lactococcus piscium MKFS47]
MKKNKQSFIKKRWLVILSLTILLIIGILFPLPYYIEMPGTTENVGSMVKVDQASIVGKGSLNLTTVSMMQATGAGLIYAA
ATDFTDVYSKKDMMGNQSDSDYNRMNAFYMESAQNAAIYEAFKLANKPFELTYKGVYVLDVMQASSFKNVLQVADTVSGV
DGKKFKSSQELMSYIKSLKVGGPISVQYTNDQGKNKSADGKTIKLADGKAGIGITLVDHTVVSSTPTVTINAGGIGGPSA
GMMFTLEIYSQLTGKDLTQGKDIAGTGTIEANGIVGRIGGIDKKVATANQNGAKVFLAPDDQITPEMKKYDKHIKTNYQE
ALDAAKKLKTKMKIVPIKTVQYAINYLENN

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1114003 LACPI_RS11195 WP_047916386.1 2303709..2304761(-) (sepM) [Lactococcus piscium MKFS47]
TTGAAAAAAAATAAACAGTCTTTTATCAAAAAAAGATGGTTAGTTATCCTTTCTTTAACGATTCTGCTAATCATCGGTAT
CCTATTCCCATTACCTTATTATATTGAAATGCCAGGAACTACTGAAAATGTTGGCTCCATGGTCAAGGTTGATCAGGCTT
CTATCGTTGGCAAAGGGTCGTTAAATTTGACAACAGTATCTATGATGCAGGCAACCGGAGCAGGCTTGATATATGCTGCA
GCAACTGATTTCACAGATGTTTACAGTAAGAAGGACATGATGGGCAATCAATCTGATAGTGATTATAATCGGATGAATGC
TTTTTATATGGAAAGTGCACAAAATGCGGCTATTTATGAAGCCTTTAAACTGGCTAATAAACCTTTTGAATTAACTTATA
AAGGGGTTTATGTTTTAGACGTGATGCAGGCATCATCTTTTAAAAATGTGTTACAAGTAGCTGATACTGTTAGTGGTGTT
GACGGAAAAAAATTCAAATCTTCTCAAGAGTTAATGTCATATATCAAGTCTTTAAAAGTAGGTGGACCTATCTCTGTTCA
ATATACCAATGATCAGGGAAAAAATAAATCAGCGGATGGCAAAACAATTAAATTAGCTGATGGTAAAGCTGGCATTGGGA
TTACATTAGTTGATCATACTGTTGTTTCTAGCACGCCTACTGTTACGATAAATGCTGGGGGGATAGGCGGACCATCTGCT
GGGATGATGTTTACACTTGAAATCTATTCTCAGTTAACAGGTAAGGATTTGACTCAGGGTAAGGATATAGCAGGTACAGG
TACTATCGAGGCAAATGGTATAGTAGGTCGAATTGGTGGTATCGATAAAAAAGTGGCGACTGCCAATCAAAACGGCGCGA
AAGTATTTTTAGCACCTGATGATCAGATTACGCCGGAAATGAAAAAATACGATAAACATATCAAAACAAATTATCAAGAG
GCACTGGATGCTGCAAAAAAATTAAAAACTAAAATGAAGATTGTGCCAATAAAGACAGTGCAATATGCAATTAATTACTT
GGAAAATAATTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(236-317)

PDZ domain (PDZ_2)

(133-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D6E074

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

50.857

100

0.509

Multiple sequence alignment