Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LACPI_RS04165 Genome accession   NZ_LN774769
Coordinates   845133..846935 (+) Length   600 a.a.
NCBI ID   WP_047915204.1    Uniprot ID   -
Organism   Lactococcus piscium MKFS47     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 840133..851935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LACPI_RS04140 (LACPI_0810) - 840209..840535 (+) 327 WP_047915200.1 thioredoxin fold domain-containing protein -
  LACPI_RS04145 (LACPI_0811) - 840681..840941 (+) 261 WP_047915201.1 SemiSWEET family transporter -
  LACPI_RS04150 (LACPI_0812) - 841196..842866 (+) 1671 WP_082095402.1 formate--tetrahydrofolate ligase -
  LACPI_RS04155 (LACPI_0813) - 842975..843946 (+) 972 WP_047915202.1 Gfo/Idh/MocA family protein -
  LACPI_RS04160 (LACPI_0814) - 844047..845030 (+) 984 WP_047915203.1 competence protein CoiA -
  LACPI_RS04165 (LACPI_0815) pepF 845133..846935 (+) 1803 WP_047915204.1 oligoendopeptidase F Regulator
  LACPI_RS04170 (LACPI_0816) - 846936..847676 (+) 741 WP_047915205.1 O-methyltransferase -
  LACPI_RS04175 (LACPI_0817) - 847778..848686 (+) 909 WP_047915206.1 peptidyl-prolyl cis-trans isomerase -
  LACPI_RS04180 (LACPI_0818) - 848898..849395 (+) 498 WP_047915207.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68241.68 Da        Isoelectric Point: 4.6081

>NTDB_id=1113977 LACPI_RS04165 WP_047915204.1 845133..846935(+) (pepF) [Lactococcus piscium MKFS47]
MVKKRDEISDAYKWDLTTIFETDSLFEAELTSVLSAIDDIPKLSGTLIDSADTLLTITELELALMQRVEKLYVYASMKND
QDTTVSLYQEYQAKVTGLYAKFSEAFAFYEPEFMSLSQEQFAQFNIDKPKLQAYGHFFAQLFEKKQHVLSSAEEVILAGA
SEVFGAGAETFEVLDNTDIVFPMVQDDMGQEIQLSHGNYIALMESPKREVRQAAYEALYSVYAQYQHTYAKTLQTNVKAQ
NFTAKTRHYASARQAAMSSHHIPEAVYDTLVDTVNAHLPLLHRYIKLRQDVLGIEQLKMYDVYAPLSKTDYKFTYEAAVI
KAQDTLAILGQDYLDKVKRSFKENWIDVQENKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHEMGHSMHSSFTRET
QPYVYGDYSIFLAEIASTTNENILTETLLNEVTDVQTRFAILNHFLDGFRGTVFRQTQFAEFEHAIHEADAAGTVLTSAY
LNTLYAELNEKYYGLSAQENPEIQYEWARIPHFYYNYYVFQYATGFAAASALADKIVTGSEQDKADYLDYLRAGASDYPL
AVMAKAGVDMTSSAYLTDAFKVFEKRLIELETIVKKGEQI

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1113977 LACPI_RS04165 WP_047915204.1 845133..846935(+) (pepF) [Lactococcus piscium MKFS47]
ATGGTAAAAAAACGTGATGAGATATCAGATGCCTATAAATGGGATTTAACGACAATTTTTGAGACTGATAGCCTATTTGA
AGCAGAACTCACGAGTGTGTTAAGTGCAATAGATGACATCCCTAAATTATCTGGGACATTGATCGATTCTGCTGATACTT
TGCTTACAATCACTGAGTTAGAGTTAGCTTTGATGCAACGTGTTGAAAAACTTTATGTGTATGCATCTATGAAAAATGAT
CAAGATACGACCGTCAGTCTTTATCAGGAATACCAAGCCAAGGTAACAGGATTATATGCAAAATTCAGTGAAGCATTTGC
TTTTTACGAACCAGAATTTATGAGCCTATCTCAAGAACAGTTTGCCCAGTTTAATATTGATAAACCAAAACTGCAAGCCT
ATGGTCATTTTTTTGCGCAGTTATTTGAGAAAAAACAGCATGTCTTATCCAGTGCAGAAGAAGTTATTTTAGCTGGGGCT
TCAGAAGTATTTGGTGCAGGTGCTGAGACATTTGAAGTGTTGGATAACACAGATATTGTATTTCCGATGGTCCAGGATGA
CATGGGACAGGAAATACAGCTGTCACATGGTAACTATATAGCGCTAATGGAATCTCCTAAGCGTGAGGTTAGACAAGCGG
CCTATGAAGCACTATACAGTGTTTACGCCCAGTATCAGCATACGTATGCAAAGACACTACAAACGAATGTAAAAGCACAA
AATTTCACTGCTAAGACACGGCATTATGCCTCTGCGCGTCAAGCTGCCATGTCTAGTCATCATATTCCAGAAGCTGTCTA
CGATACCTTGGTTGATACCGTTAATGCCCATCTGCCTTTATTACATCGCTATATCAAATTGCGTCAGGATGTACTTGGTA
TTGAGCAGCTTAAAATGTATGATGTGTATGCCCCATTATCAAAAACGGATTATAAGTTTACCTACGAAGCAGCGGTGATC
AAGGCACAGGACACACTAGCTATTTTGGGACAAGACTATCTGGATAAGGTCAAACGTAGTTTCAAAGAAAACTGGATTGA
TGTACAAGAAAACAAAGGCAAACGATCGGGTGCCTACTCAGGTGGATCTTATGATACAAATGCCTTTATGTTGCTTAACT
GGCAGGATACACTAGATAATCTTTTTACACTCGTCCATGAGATGGGCCATAGTATGCATAGTAGTTTCACACGTGAAACC
CAACCTTATGTTTATGGAGACTACAGTATTTTCCTTGCAGAAATTGCGTCGACGACAAACGAAAATATCTTGACTGAGAC
CTTACTAAATGAGGTGACGGATGTGCAAACCAGATTTGCAATTCTCAACCATTTTTTGGATGGGTTTAGAGGAACCGTCT
TTAGACAAACACAGTTTGCGGAGTTTGAACATGCAATCCATGAGGCTGATGCAGCAGGCACAGTACTCACAAGTGCCTAT
TTAAATACCTTGTATGCTGAGCTGAATGAAAAGTATTATGGTCTTTCGGCGCAAGAAAACCCGGAAATTCAGTATGAATG
GGCACGAATCCCTCATTTTTACTATAATTACTATGTCTTCCAATATGCCACAGGATTTGCGGCAGCATCTGCACTAGCGG
ATAAAATAGTAACTGGTAGTGAGCAGGACAAGGCCGATTATTTGGATTACCTGCGTGCCGGTGCTTCAGACTATCCCTTA
GCAGTTATGGCTAAAGCAGGCGTTGATATGACCTCATCAGCCTATTTGACTGATGCCTTTAAGGTGTTTGAAAAACGCTT
GATTGAACTAGAGACGATTGTCAAAAAAGGTGAACAAATTTAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

63.484

99.5

0.632

Multiple sequence alignment