Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   VV28_RS16430 Genome accession   NZ_LN680001
Coordinates   3270812..3271456 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS34A     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3265812..3276456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV28_RS16395 (BS34A_34590) mrpB 3267004..3267435 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  VV28_RS16400 (BS34A_34600) mrpC 3267435..3267776 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  VV28_RS16405 (BS34A_34610) mrpD 3267769..3269250 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  VV28_RS16410 (BS34A_34620) mrpE 3269256..3269732 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  VV28_RS16415 (BS34A_34630) mrpF 3269732..3270016 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  VV28_RS16420 (BS34A_34640) mnhG 3270000..3270374 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  VV28_RS16425 (BS34A_34650) yuxO 3270413..3270793 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  VV28_RS16430 (BS34A_34660) comA 3270812..3271456 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  VV28_RS16435 (BS34A_34670) comP 3271537..3273846 (-) 2310 WP_032723438.1 two-component system sensor histidine kinase ComP Regulator
  VV28_RS16440 (BS34A_34680) comX 3273861..3274028 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  VV28_RS16445 (BS34A_34690) comQ 3274016..3274915 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  VV28_RS16450 (BS34A_34700) degQ 3275100..3275240 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  VV28_RS22580 - 3275462..3275587 (+) 126 WP_003228793.1 hypothetical protein -
  VV28_RS16455 (BS34A_34710) - 3275701..3276069 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1113891 VV28_RS16430 WP_003220716.1 3270812..3271456(-) (comA) [Bacillus subtilis strain BS34A]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1113891 VV28_RS16430 WP_003220716.1 3270812..3271456(-) (comA) [Bacillus subtilis strain BS34A]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment