Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   VV28_RS07670 Genome accession   NZ_LN680001
Coordinates   1517842..1518120 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain BS34A     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512842..1523120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV28_RS07655 (BS34A_16030) panEB 1514029..1514940 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  VV28_RS07660 (BS34A_16040) ampS 1514974..1516206 (-) 1233 WP_003232341.1 aminopeptidase -
  VV28_RS21520 (BS34A_16050) ykpC 1516316..1516450 (-) 135 WP_003238865.1 protein YkpC -
  VV28_RS07665 (BS34A_16060) mreBH 1516551..1517558 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  VV28_RS07670 (BS34A_16070) abrB 1517842..1518120 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  VV28_RS07675 (BS34A_16080) kinC 1518310..1519596 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  VV28_RS07680 (BS34A_16090) ykqA 1519612..1520445 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  VV28_RS07685 (BS34A_16100) ktrC 1520508..1521173 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  VV28_RS07690 (BS34A_16110) ade 1521328..1523061 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=1113861 VV28_RS07670 WP_003244728.1 1517842..1518120(+) (abrB) [Bacillus subtilis strain BS34A]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1113861 VV28_RS07670 WP_003244728.1 1517842..1518120(+) (abrB) [Bacillus subtilis strain BS34A]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment