Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   VV28_RS07555 Genome accession   NZ_LN680001
Coordinates   1493764..1494339 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS34A     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1488764..1499339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV28_RS07525 (BS34A_15770) dapD 1488950..1489660 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  VV28_RS07530 (BS34A_15780) dapI 1489730..1490854 (+) 1125 WP_003232383.1 N-acetyldiaminopimelate deacetylase -
  VV28_RS07535 (BS34A_15790) ykuS 1490916..1491161 (+) 246 WP_003232382.1 YkuS family protein -
  VV28_RS07540 (BS34A_15800) mscT 1491198..1492001 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  VV28_RS07545 (BS34A_15810) ahpA 1492238..1492780 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  VV28_RS07550 (BS34A_15820) ykuV 1492852..1493298 (+) 447 WP_003245810.1 thiol-disulfide oxidoreductase YkuV -
  VV28_RS07555 (BS34A_15830) rok 1493764..1494339 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  VV28_RS07560 (BS34A_15840) cse15 1494380..1495345 (-) 966 WP_003245018.1 spore protein Cse15 -
  VV28_RS07565 (BS34A_15850) mobA 1495482..1496081 (+) 600 WP_003232376.1 molybdenum cofactor guanylyltransferase -
  VV28_RS07570 (BS34A_15860) moeB 1496132..1497151 (+) 1020 WP_003232375.1 molybdopterin-synthase adenylyltransferase MoeB -
  VV28_RS07575 (BS34A_15870) glp 1497169..1498461 (+) 1293 WP_003232372.1 gephyrin-like molybdotransferase Glp -
  VV28_RS07580 (BS34A_15880) mobB 1498422..1498943 (+) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=1113860 VV28_RS07555 WP_003232378.1 1493764..1494339(+) (rok) [Bacillus subtilis strain BS34A]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1113860 VV28_RS07555 WP_003232378.1 1493764..1494339(+) (rok) [Bacillus subtilis strain BS34A]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment