Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   VV28_RS05585 Genome accession   NZ_LN680001
Coordinates   1117083..1117661 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain BS34A     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1112083..1122661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV28_RS05565 (BS34A_11520) hemAT 1112594..1113892 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  VV28_RS05570 (BS34A_11530) comW 1114031..1115560 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  VV28_RS05575 (BS34A_11540) yhxC 1115672..1116529 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  VV28_RS05580 (BS34A_11550) yhzC 1116557..1116790 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  VV28_RS05585 (BS34A_11560) comK 1117083..1117661 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  VV28_RS05590 (BS34A_11570) yhxD 1117708..1118607 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  VV28_RS05595 (BS34A_11580) yhjA 1118824..1119093 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  VV28_RS05600 (BS34A_11590) yhjB 1119136..1120605 (-) 1470 WP_003233134.1 sodium:solute symporter -
  VV28_RS05605 (BS34A_11600) yhjC 1120602..1120802 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  VV28_RS05610 (BS34A_11610) - 1121010..1121372 (-) 363 WP_003233132.1 hypothetical protein -
  VV28_RS05615 (BS34A_11620) yhjE 1121524..1122147 (+) 624 WP_010886465.1 VTT domain-containing protein -
  VV28_RS05620 (BS34A_11630) lepB 1122149..1122655 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=1113847 VV28_RS05585 WP_003245329.1 1117083..1117661(+) (comK) [Bacillus subtilis strain BS34A]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1113847 VV28_RS05585 WP_003245329.1 1117083..1117661(+) (comK) [Bacillus subtilis strain BS34A]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment