Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   VV28_RS04560 Genome accession   NZ_LN680001
Coordinates   925611..926405 (+) Length   264 a.a.
NCBI ID   WP_003243354.1    Uniprot ID   A0AAE2SGN5
Organism   Bacillus subtilis strain BS34A     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 920611..931405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV28_RS04535 (BS34A_09430) sxzA 921450..922481 (+) 1032 WP_003243057.1 iron ABC transporter permease -
  VV28_RS04540 (BS34A_09440) yfhB 922596..923477 (+) 882 WP_003242763.1 PhzF family phenazine biosynthesis protein -
  VV28_RS04545 (BS34A_09450) yfhC 923565..924149 (+) 585 WP_003243940.1 nitroreductase -
  VV28_RS04550 (BS34A_09460) yfhD 924188..924379 (-) 192 WP_003233561.1 YfhD family protein -
  VV28_RS21390 (BS34A_09470) yfhE 924446..924556 (-) 111 WP_003223230.1 YfhE family protein -
  VV28_RS04555 (BS34A_09480) yfhF 924611..925522 (-) 912 WP_003244332.1 TIGR01777 family oxidoreductase -
  VV28_RS04560 (BS34A_09490) recX 925611..926405 (+) 795 WP_003243354.1 recombination regulator RecX Regulator
  VV28_RS04565 (BS34A_09500) yfhH 926407..926721 (+) 315 WP_003244592.1 YfhH family protein -
  VV28_RS04570 (BS34A_09520) yfhI 926864..928057 (+) 1194 WP_003243500.1 MFS transporter -
  VV28_RS04575 (BS34A_09530) sspK 928090..928242 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  VV28_RS04580 (BS34A_09540) yfhJ 928367..928636 (+) 270 WP_003243789.1 YfhJ family protein -
  VV28_RS04585 (BS34A_09550) yfhK 928781..929299 (+) 519 WP_003243363.1 SH3 domain-containing protein -
  VV28_RS04590 (BS34A_09560) spdL 929384..929716 (+) 333 WP_003242803.1 SdpC immunity protein SpdL -
  VV28_RS04595 (BS34A_09570) ephM 929703..930563 (+) 861 WP_003243419.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31013.23 Da        Isoelectric Point: 6.6686

>NTDB_id=1113842 VV28_RS04560 WP_003243354.1 925611..926405(+) (recX) [Bacillus subtilis strain BS34A]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=1113842 VV28_RS04560 WP_003243354.1 925611..926405(+) (recX) [Bacillus subtilis strain BS34A]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGATCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment