Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   VV34_RS12310 Genome accession   NZ_LN649259
Coordinates   2358812..2359432 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS49     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2353812..2364432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV34_RS12270 (BS49_24510) ptsA 2354943..2355449 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  VV34_RS12275 (BS49_24520) ypqA 2355587..2356006 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  VV34_RS12280 (BS49_24530) sppG 2356027..2356404 (-) 378 WP_004398696.1 YppG family protein -
  VV34_RS12285 (BS49_24540) yppF 2356592..2356780 (+) 189 WP_003230690.1 YppF family protein -
  VV34_RS12290 (BS49_24550) yppE 2356819..2357190 (-) 372 WP_003246080.1 YppE family protein -
  VV34_RS12295 (BS49_24560) yppD 2357236..2357481 (-) 246 WP_004398488.1 YppD family protein -
  VV34_RS12300 (BS49_24570) sspM 2357680..2357784 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  VV34_RS12305 (BS49_24580) yppC 2357809..2358771 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  VV34_RS12310 (BS49_24590) recU 2358812..2359432 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  VV34_RS12315 (BS49_24600) ponA 2359454..2362198 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  VV34_RS12320 (BS49_24610) ypoC 2362274..2362768 (-) 495 WP_009967579.1 YpoC family protein -
  VV34_RS12325 (BS49_24620) nth 2362765..2363424 (-) 660 WP_009967580.1 endonuclease III -
  VV34_RS12330 (BS49_24630) dnaD 2363443..2364141 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1113780 VV34_RS12310 WP_004399067.1 2358812..2359432(+) (recU) [Bacillus subtilis strain BS49]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1113780 VV34_RS12310 WP_004399067.1 2358812..2359432(+) (recU) [Bacillus subtilis strain BS49]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment