Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   VV34_RS08020 Genome accession   NZ_LN649259
Coordinates   1511799..1512374 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS49     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1506799..1517374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV34_RS07990 (BS49_15950) dapD 1506985..1507695 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  VV34_RS07995 (BS49_15960) dapI 1507765..1508889 (+) 1125 WP_003232383.1 N-acetyldiaminopimelate deacetylase -
  VV34_RS08000 (BS49_15970) ykuS 1508951..1509196 (+) 246 WP_003232382.1 YkuS family protein -
  VV34_RS08005 (BS49_15980) mscT 1509233..1510036 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  VV34_RS08010 (BS49_15990) ahpA 1510273..1510815 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  VV34_RS08015 (BS49_16000) ykuV 1510887..1511333 (+) 447 WP_003245810.1 thiol-disulfide oxidoreductase YkuV -
  VV34_RS08020 (BS49_16010) rok 1511799..1512374 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  VV34_RS08025 (BS49_16020) cse15 1512415..1513380 (-) 966 WP_003245018.1 spore protein Cse15 -
  VV34_RS08030 (BS49_16030) mobA 1513517..1514116 (+) 600 WP_003232376.1 molybdenum cofactor guanylyltransferase -
  VV34_RS08035 (BS49_16040) moeB 1514167..1515186 (+) 1020 WP_003232375.1 molybdopterin-synthase adenylyltransferase MoeB -
  VV34_RS08040 (BS49_16050) glp 1515204..1516496 (+) 1293 WP_003232372.1 gephyrin-like molybdotransferase Glp -
  VV34_RS08045 (BS49_16060) mobB 1516457..1516978 (+) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=1113774 VV34_RS08020 WP_003232378.1 1511799..1512374(+) (rok) [Bacillus subtilis strain BS49]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1113774 VV34_RS08020 WP_003232378.1 1511799..1512374(+) (rok) [Bacillus subtilis strain BS49]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment