Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   VV34_RS05840 Genome accession   NZ_LN649259
Coordinates   1117081..1117659 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain BS49     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1112081..1122659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV34_RS05820 (BS49_11520) hemAT 1112592..1113890 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  VV34_RS05825 (BS49_11530) comW 1114029..1115558 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  VV34_RS05830 (BS49_11540) yhxC 1115670..1116527 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  VV34_RS05835 (BS49_11550) yhzC 1116555..1116788 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  VV34_RS05840 (BS49_11560) comK 1117081..1117659 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  VV34_RS05845 (BS49_11570) yhxD 1117706..1118605 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  VV34_RS05850 (BS49_11580) yhjA 1118822..1119091 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  VV34_RS05855 (BS49_11590) yhjB 1119134..1120603 (-) 1470 WP_003233134.1 sodium:solute symporter -
  VV34_RS05860 (BS49_11600) yhjC 1120600..1120800 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  VV34_RS05865 (BS49_11610) - 1121008..1121370 (-) 363 WP_003233132.1 hypothetical protein -
  VV34_RS05870 (BS49_11620) yhjE 1121522..1122145 (+) 624 WP_010886465.1 VTT domain-containing protein -
  VV34_RS05875 (BS49_11630) lepB 1122147..1122653 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=1113761 VV34_RS05840 WP_003245329.1 1117081..1117659(+) (comK) [Bacillus subtilis strain BS49]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1113761 VV34_RS05840 WP_003245329.1 1117081..1117659(+) (comK) [Bacillus subtilis strain BS49]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment