Detailed information
Bioinformatically predicted
Overview
| Name | rocC | Type | Regulator |
| Locus tag | LMI_RS00660 | Genome accession | NZ_LN614830 |
| Coordinates | 138706..139365 (+) | Length | 219 a.a. |
| NCBI ID | WP_045098087.1 | Uniprot ID | A0A098GAR0 |
| Organism | Legionella micdadei strain ATCC 33218 | ||
| Function | rocR chaperone; repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 133706..144365
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMI_RS00640 (LMI_0142) | - | 134076..134258 (-) | 183 | WP_045098083.1 | hypothetical protein | - |
| LMI_RS00645 (LMI_0143) | - | 134415..137255 (+) | 2841 | WP_045098084.1 | hypothetical protein | - |
| LMI_RS00650 (LMI_0144) | dapB | 137331..138068 (-) | 738 | WP_045098085.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| LMI_RS15745 | - | 138237..138392 (-) | 156 | Protein_130 | YqaE/Pmp3 family membrane protein | - |
| LMI_RS00660 (LMI_0146) | rocC | 138706..139365 (+) | 660 | WP_045098087.1 | ProQ/FinO family protein | Regulator |
| LMI_RS00665 (LMI_0147) | - | 139432..139839 (-) | 408 | WP_045098088.1 | acyl-CoA thioesterase | - |
| LMI_RS00670 (LMI_0148) | - | 139836..142013 (-) | 2178 | WP_102010572.1 | primosomal protein N' | - |
| LMI_RS00675 (LMI_0149) | - | 142010..142504 (-) | 495 | WP_045100474.1 | 6-carboxytetrahydropterin synthase | - |
| LMI_RS00680 (LMI_0150) | - | 142504..143616 (-) | 1113 | WP_045100475.1 | SAM-dependent methyltransferase | - |
Sequence
Protein
Download Length: 219 a.a. Molecular weight: 24897.80 Da Isoelectric Point: 11.0145
>NTDB_id=1113640 LMI_RS00660 WP_045098087.1 138706..139365(+) (rocC) [Legionella micdadei strain ATCC 33218]
MRRQELHPRTAVINKTQKNKSKKARNEALSWLAVTFPQVFDNSLRIRPLKTGIMHDILAYADKAQEAGISKSKLREAVVL
FTRRIDYLTCLKAREMRIDLDGNPVAMVTEEEAERAAVKIKKRVEKSARNARKNLLSKVPNQSSRLSQPGFQPSQEIIPP
FPERAPAYSMQNASVQTTRSPSVIVKHKSARQFDPNAVARLKEKLGLSRKTEIEKENIE
MRRQELHPRTAVINKTQKNKSKKARNEALSWLAVTFPQVFDNSLRIRPLKTGIMHDILAYADKAQEAGISKSKLREAVVL
FTRRIDYLTCLKAREMRIDLDGNPVAMVTEEEAERAAVKIKKRVEKSARNARKNLLSKVPNQSSRLSQPGFQPSQEIIPP
FPERAPAYSMQNASVQTTRSPSVIVKHKSARQFDPNAVARLKEKLGLSRKTEIEKENIE
Nucleotide
Download Length: 660 bp
>NTDB_id=1113640 LMI_RS00660 WP_045098087.1 138706..139365(+) (rocC) [Legionella micdadei strain ATCC 33218]
ATGAGAAGACAAGAGCTTCATCCGCGGACAGCTGTAATTAATAAAACACAAAAAAATAAATCAAAGAAAGCTCGTAATGA
AGCTTTATCATGGCTAGCAGTTACTTTTCCGCAAGTATTTGATAATAGTTTACGAATTCGACCGCTCAAAACAGGAATTA
TGCATGATATCTTAGCTTACGCAGATAAAGCACAAGAAGCAGGGATATCGAAGAGCAAGCTTCGTGAGGCAGTAGTTCTA
TTTACCCGTCGCATTGATTATTTAACCTGCCTTAAAGCGCGTGAAATGCGAATTGATTTAGATGGTAATCCTGTTGCCAT
GGTGACTGAAGAAGAAGCGGAGAGGGCGGCGGTTAAAATTAAAAAACGAGTTGAGAAAAGTGCACGTAATGCACGCAAAA
ATCTGCTCAGTAAGGTGCCAAACCAATCCAGTAGGTTAAGCCAACCGGGTTTTCAACCAAGCCAAGAAATTATCCCCCCT
TTTCCAGAGCGCGCTCCTGCTTACAGCATGCAAAATGCTTCTGTGCAAACGACGCGTTCCCCTTCCGTGATTGTAAAACA
TAAGAGTGCTCGGCAATTTGATCCTAATGCAGTTGCACGGCTGAAAGAGAAGTTAGGCTTATCTCGCAAGACAGAAATAG
AGAAAGAAAACATTGAGTAG
ATGAGAAGACAAGAGCTTCATCCGCGGACAGCTGTAATTAATAAAACACAAAAAAATAAATCAAAGAAAGCTCGTAATGA
AGCTTTATCATGGCTAGCAGTTACTTTTCCGCAAGTATTTGATAATAGTTTACGAATTCGACCGCTCAAAACAGGAATTA
TGCATGATATCTTAGCTTACGCAGATAAAGCACAAGAAGCAGGGATATCGAAGAGCAAGCTTCGTGAGGCAGTAGTTCTA
TTTACCCGTCGCATTGATTATTTAACCTGCCTTAAAGCGCGTGAAATGCGAATTGATTTAGATGGTAATCCTGTTGCCAT
GGTGACTGAAGAAGAAGCGGAGAGGGCGGCGGTTAAAATTAAAAAACGAGTTGAGAAAAGTGCACGTAATGCACGCAAAA
ATCTGCTCAGTAAGGTGCCAAACCAATCCAGTAGGTTAAGCCAACCGGGTTTTCAACCAAGCCAAGAAATTATCCCCCCT
TTTCCAGAGCGCGCTCCTGCTTACAGCATGCAAAATGCTTCTGTGCAAACGACGCGTTCCCCTTCCGTGATTGTAAAACA
TAAGAGTGCTCGGCAATTTGATCCTAATGCAGTTGCACGGCTGAAAGAGAAGTTAGGCTTATCTCGCAAGACAGAAATAG
AGAAAGAAAACATTGAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rocC | Legionella pneumophila str. Paris |
62.609 |
100 |
0.658 |