Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | SXYL_RS06470 | Genome accession | NZ_LN554884 |
| Coordinates | 1358687..1359661 (+) | Length | 324 a.a. |
| NCBI ID | WP_047172312.1 | Uniprot ID | - |
| Organism | Staphylococcus xylosus strain C2a | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1353687..1364661
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SXYL_RS06435 (SXYL_01305) | rpmG | 1353795..1353944 (+) | 150 | WP_002483181.1 | 50S ribosomal protein L33 | - |
| SXYL_RS06440 (SXYL_01306) | - | 1354075..1354617 (+) | 543 | WP_047172309.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| SXYL_RS06445 (SXYL_01307) | - | 1354629..1356086 (+) | 1458 | WP_047172310.1 | rhomboid family intramembrane serine protease | - |
| SXYL_RS06450 | - | 1356070..1356264 (+) | 195 | WP_042363548.1 | YqgQ family protein | - |
| SXYL_RS06455 (SXYL_01308) | - | 1356654..1357640 (+) | 987 | WP_029377187.1 | glucokinase | - |
| SXYL_RS06460 (SXYL_01309) | - | 1357640..1357963 (+) | 324 | WP_042362616.1 | MTH1187 family thiamine-binding protein | - |
| SXYL_RS06465 (SXYL_01310) | - | 1357965..1358588 (+) | 624 | WP_047172311.1 | MBL fold metallo-hydrolase | - |
| SXYL_RS06470 (SXYL_01311) | comGA | 1358687..1359661 (+) | 975 | WP_047172312.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SXYL_RS06475 (SXYL_01312) | comGB | 1359633..1360700 (+) | 1068 | WP_047172313.1 | competence type IV pilus assembly protein ComGB | - |
| SXYL_RS06480 | comGC | 1360720..1361037 (+) | 318 | Protein_1254 | competence type IV pilus major pilin ComGC | - |
| SXYL_RS06485 (SXYL_01314) | comGD | 1361015..1361461 (+) | 447 | WP_225526499.1 | competence type IV pilus minor pilin ComGD | - |
| SXYL_RS06490 | - | 1361448..1361747 (+) | 300 | WP_047172315.1 | hypothetical protein | - |
| SXYL_RS06495 (SXYL_01315) | comGF | 1361731..1362162 (+) | 432 | WP_231851550.1 | competence type IV pilus minor pilin ComGF | - |
| SXYL_RS06505 (SXYL_01316) | - | 1362342..1362842 (+) | 501 | WP_042363549.1 | shikimate kinase | - |
| SXYL_RS06510 (SXYL_01317) | gcvT | 1363030..1364121 (+) | 1092 | WP_047172319.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37204.43 Da Isoelectric Point: 9.3719
>NTDB_id=1113560 SXYL_RS06470 WP_047172312.1 1358687..1359661(+) (comGA) [Staphylococcus xylosus strain C2a]
MKLLFNSMIEKAINNDASDIHFIPADKEVMIKFRIRDDLKSIETLQLNTYLKLLTYMKYQAGLDVSKHNAAQSGRYIYKL
KQIYFLRISTLPLSLGNESCVIRIIPQYFQKHKNNQNITHLYNLMNKKQGLILLSGPTGSGKSTLMYHMLSYAKENLNLN
IITIEEPVEQLINGITQISLNEKAGINYETSFKAILRCDPDIILIGEIRDANVAKHVIQASLSGHLVLSTIHASNCKGVI
LRLLEMGITVQQLIQSIISILNQRLITNIKGERELVYEQINKEDIYHFFKNSYTLPKDFHNLSYKLNKMSKEGMICETSM
ERYL
MKLLFNSMIEKAINNDASDIHFIPADKEVMIKFRIRDDLKSIETLQLNTYLKLLTYMKYQAGLDVSKHNAAQSGRYIYKL
KQIYFLRISTLPLSLGNESCVIRIIPQYFQKHKNNQNITHLYNLMNKKQGLILLSGPTGSGKSTLMYHMLSYAKENLNLN
IITIEEPVEQLINGITQISLNEKAGINYETSFKAILRCDPDIILIGEIRDANVAKHVIQASLSGHLVLSTIHASNCKGVI
LRLLEMGITVQQLIQSIISILNQRLITNIKGERELVYEQINKEDIYHFFKNSYTLPKDFHNLSYKLNKMSKEGMICETSM
ERYL
Nucleotide
Download Length: 975 bp
>NTDB_id=1113560 SXYL_RS06470 WP_047172312.1 1358687..1359661(+) (comGA) [Staphylococcus xylosus strain C2a]
TTGAAGCTATTGTTTAATAGTATGATTGAAAAGGCAATTAATAATGATGCATCAGATATTCATTTTATCCCCGCAGATAA
AGAAGTAATGATTAAATTTAGAATACGTGATGATTTGAAGTCTATAGAAACATTGCAATTAAATACGTATTTAAAATTAT
TAACCTATATGAAATACCAAGCTGGATTAGATGTCTCTAAACACAATGCTGCACAGAGTGGTAGATATATTTATAAATTA
AAACAAATTTACTTCCTTAGAATATCAACGCTTCCTTTATCTCTAGGAAATGAAAGCTGTGTTATTAGGATTATTCCGCA
ATATTTTCAAAAGCATAAAAATAATCAGAACATAACGCATTTATATAATCTAATGAATAAAAAACAAGGATTAATTTTAT
TGAGTGGACCTACTGGCTCTGGAAAAAGTACGTTAATGTATCACATGTTATCTTATGCTAAGGAGAACTTAAATTTAAAT
ATAATTACAATTGAAGAGCCCGTTGAACAATTAATAAATGGCATAACTCAAATATCATTAAATGAAAAGGCAGGGATAAA
TTATGAAACTTCTTTTAAAGCTATTTTACGCTGCGATCCTGATATTATCTTGATTGGAGAAATAAGAGATGCAAACGTAG
CTAAACATGTTATACAAGCCAGTTTAAGTGGTCATTTAGTACTTTCGACAATTCATGCTAGTAATTGCAAAGGAGTTATC
TTAAGACTGCTAGAAATGGGGATAACGGTTCAACAACTCATACAATCAATCATTAGCATATTAAATCAAAGACTAATTAC
TAACATAAAAGGTGAAAGAGAGCTTGTATATGAACAGATAAATAAAGAAGATATTTATCACTTCTTTAAAAATAGCTATA
CATTACCCAAAGATTTTCATAACTTATCTTATAAACTAAATAAAATGTCAAAAGAGGGGATGATATGTGAAACATCAATG
GAACGTTATCTCTAA
TTGAAGCTATTGTTTAATAGTATGATTGAAAAGGCAATTAATAATGATGCATCAGATATTCATTTTATCCCCGCAGATAA
AGAAGTAATGATTAAATTTAGAATACGTGATGATTTGAAGTCTATAGAAACATTGCAATTAAATACGTATTTAAAATTAT
TAACCTATATGAAATACCAAGCTGGATTAGATGTCTCTAAACACAATGCTGCACAGAGTGGTAGATATATTTATAAATTA
AAACAAATTTACTTCCTTAGAATATCAACGCTTCCTTTATCTCTAGGAAATGAAAGCTGTGTTATTAGGATTATTCCGCA
ATATTTTCAAAAGCATAAAAATAATCAGAACATAACGCATTTATATAATCTAATGAATAAAAAACAAGGATTAATTTTAT
TGAGTGGACCTACTGGCTCTGGAAAAAGTACGTTAATGTATCACATGTTATCTTATGCTAAGGAGAACTTAAATTTAAAT
ATAATTACAATTGAAGAGCCCGTTGAACAATTAATAAATGGCATAACTCAAATATCATTAAATGAAAAGGCAGGGATAAA
TTATGAAACTTCTTTTAAAGCTATTTTACGCTGCGATCCTGATATTATCTTGATTGGAGAAATAAGAGATGCAAACGTAG
CTAAACATGTTATACAAGCCAGTTTAAGTGGTCATTTAGTACTTTCGACAATTCATGCTAGTAATTGCAAAGGAGTTATC
TTAAGACTGCTAGAAATGGGGATAACGGTTCAACAACTCATACAATCAATCATTAGCATATTAAATCAAAGACTAATTAC
TAACATAAAAGGTGAAAGAGAGCTTGTATATGAACAGATAAATAAAGAAGATATTTATCACTTCTTTAAAAATAGCTATA
CATTACCCAAAGATTTTCATAACTTATCTTATAAACTAAATAAAATGTCAAAAGAGGGGATGATATGTGAAACATCAATG
GAACGTTATCTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
62.963 |
100 |
0.63 |
| comGA | Staphylococcus aureus N315 |
62.963 |
100 |
0.63 |