Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   SXYL_RS04380 Genome accession   NZ_LN554884
Coordinates   947552..948268 (-) Length   238 a.a.
NCBI ID   WP_029378924.1    Uniprot ID   A0A418I5B6
Organism   Staphylococcus xylosus strain C2a     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 942552..953268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SXYL_RS04360 (SXYL_00885) - 943218..943442 (+) 225 WP_042362355.1 sulfurtransferase TusA family protein -
  SXYL_RS04365 (SXYL_00886) - 944024..944986 (+) 963 WP_047172113.1 LacI family DNA-binding transcriptional regulator -
  SXYL_RS04370 (SXYL_00887) - 945070..946554 (+) 1485 WP_047172114.1 sucrose-6-phosphate hydrolase -
  SXYL_RS04375 (SXYL_00888) - 946551..947516 (+) 966 WP_047172115.1 carbohydrate kinase family protein -
  SXYL_RS04380 (SXYL_00889) agrA 947552..948268 (-) 717 WP_029378924.1 quorum-sensing response regulator AgrA Regulator
  SXYL_RS04385 (SXYL_00890) agrC 948281..949576 (-) 1296 WP_047172116.1 quorum-sensing sensor histidine kinase AgrC -
  SXYL_RS04390 (SXYL_00891) agrD 949602..949739 (-) 138 WP_029378926.1 cyclic lactone autoinducer peptide AgrD -
  SXYL_RS04395 (SXYL_00892) - 949742..950311 (-) 570 WP_047172117.1 accessory gene regulator AgrB -
  SXYL_RS04400 (SXYL_00894) - 951077..951862 (-) 786 WP_047172118.1 carbon-nitrogen family hydrolase -
  SXYL_RS04405 (SXYL_00895) - 952226..952855 (-) 630 WP_042362363.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27939.77 Da        Isoelectric Point: 5.4095

>NTDB_id=1113549 SXYL_RS04380 WP_029378924.1 947552..948268(-) (agrA) [Staphylococcus xylosus strain C2a]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATADPYDILERSKNINDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRVIDCLETSESRLKLLSKESSVETIELKRGSNSIYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGNLKEIDQLDKRFFRCHNSFVVNRHNIESIDSKSRVVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1113549 SXYL_RS04380 WP_029378924.1 947552..948268(-) (agrA) [Staphylococcus xylosus strain C2a]
GTGAAAATATTCATTTGTGAAGATGATGAAAGACAACGTGAACATATGGTTTCAATTATAAATAACTATATTATGATTGA
AGAAAAACCAATGGAAATTGAAGTTGCGACAGCTGATCCTTATGACATTTTAGAACGCTCAAAGAACATTAATGATATAG
GATGTTACTTTTTAGATATTCAACTAGAAGCTGACATCAACGGAATCAAGCTTGCAAGTGAAATACGTAAACATGATCCG
GTTGGCAATATCATTTTTGTTACAAGTCATAGTGAACTGACATACTTAACATTTGTCTACAAGGTTGCAGCAATGGATTT
CATTTTCAAAGATGATCCAGACGAATTAAAATCAAGAGTGATTGATTGCTTAGAAACATCTGAGTCACGACTAAAACTAC
TTTCAAAAGAAAGCAGCGTCGAAACAATAGAATTAAAACGTGGTAGCAATTCTATTTATGTACAATATGACGATGTGATG
TTCTTCGAATCATCTAGTAAATCCCATCGCTTAATCGCACATCTCGATAATCGTCAAATCGAATTTTATGGAAACCTTAA
AGAAATTGATCAGTTAGATAAACGCTTCTTTAGATGTCATAATAGTTTTGTAGTAAATAGACACAATATTGAGTCCATCG
ACTCTAAATCACGTGTAGTTTATTTTAAAAACAATGAACATTGTTATGCTTCTGTAAGAAATGTTAAAAAGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A418I5B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

84.874

100

0.849

Multiple sequence alignment