Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECRV308_RS04845 Genome accession   NZ_LM995446
Coordinates   986257..986886 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain K-12 substr. RV308     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 981257..991886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECRV308_RS04820 (ECRV308_00937) ycbZ 981658..983418 (-) 1761 WP_000156518.1 Lon protease family protein -
  ECRV308_RS04825 (ECRV308_00938) matP 983604..984056 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ECRV308_RS04830 (ECRV308_00939) ompA 984132..985172 (-) 1041 WP_000750416.1 porin OmpA -
  ECRV308_RS04840 (ECRV308_00940) sulA 985529..986038 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ECRV308_RS04845 (ECRV308_00941) sxy/tfoX 986257..986886 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECRV308_RS04850 (ECRV308_00942) yccS 986849..989011 (-) 2163 WP_000875061.1 YccS family putative transporter -
  ECRV308_RS04855 (ECRV308_00943) yccF 989021..989467 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ECRV308_RS04860 (ECRV308_00944) helD 989590..991644 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1113508 ECRV308_RS04845 WP_000839153.1 986257..986886(+) (sxy/tfoX) [Escherichia coli strain K-12 substr. RV308]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1113508 ECRV308_RS04845 WP_000839153.1 986257..986886(+) (sxy/tfoX) [Escherichia coli strain K-12 substr. RV308]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment