Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VANGNB10_RS10495 Genome accession   NZ_LK021130
Coordinates   1072492..1073952 (+) Length   486 a.a.
NCBI ID   WP_040122958.1    Uniprot ID   Q6QUN3
Organism   Vibrio anguillarum strain NB10     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1067492..1078952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VANGNB10_RS10490 (TVA1921) uvrB 1070220..1072250 (+) 2031 WP_041769234.1 excinuclease ABC subunit UvrB -
  VANGNB10_RS10495 (TVA1919) luxO 1072492..1073952 (+) 1461 WP_040122958.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VANGNB10_RS10500 (TVA1918) luxU 1073957..1074295 (+) 339 WP_013857261.1 quorum-sensing phosphorelay protein LuxU -
  VANGNB10_RS10505 (TVA1917) - 1074292..1075182 (-) 891 WP_013857260.1 YvcK family protein -
  VANGNB10_RS10510 (TVA1916) moaA 1075493..1076482 (+) 990 WP_026028246.1 GTP 3',8-cyclase MoaA -
  VANGNB10_RS10515 (TVA1915) moaB 1076549..1077061 (+) 513 WP_010320682.1 molybdenum cofactor biosynthesis protein B -
  VANGNB10_RS10520 (TVA1914) moaC 1077072..1077572 (+) 501 WP_010320681.1 cyclic pyranopterin monophosphate synthase MoaC -
  VANGNB10_RS10525 (TVA1913) moaD 1077565..1077810 (+) 246 WP_010320680.1 molybdopterin synthase sulfur carrier subunit -
  VANGNB10_RS10530 (TVA1912) moaE 1077813..1078283 (+) 471 WP_038148363.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 486 a.a.        Molecular weight: 54371.11 Da        Isoelectric Point: 5.9958

>NTDB_id=1113435 VANGNB10_RS10495 WP_040122958.1 1072492..1073952(+) (luxO) [Vibrio anguillarum strain NB10]
MQPDFSLQKAKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLAHREPDLILLDLRLPDMTGMDVLHAVKSHY
PNVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEAGNPGNQNYQGFIGSSQTMQSVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKGFVRLAPEVVERFTRYEWPGNVRQLQNVLRNVVVLNHGNEIELSMLPPPLNQVVDNKI
RLANLTTETRKENITVHDIFPLWMTETRKENITVHDIFPLWMTEKQAIEQAIEACDGNIPKAASYLDVSPSTIYRKLQAW
NSRENS

Nucleotide


Download         Length: 1461 bp        

>NTDB_id=1113435 VANGNB10_RS10495 WP_040122958.1 1072492..1073952(+) (luxO) [Vibrio anguillarum strain NB10]
ATGCAACCTGACTTTTCTCTACAAAAGGCTAAATATCTTTTGATGGTGGAAGATACGGCTTCCGTTGCGGCGCTGTATCG
TTCATACCTCACCCCCCTTGAAATCGATATCAATATTGTTGGTACAGGTCGTGATGCGATAGAGAGTTTAGCTCACCGAG
AGCCGGACCTCATATTGCTGGATCTTCGATTACCCGATATGACGGGCATGGACGTTTTACATGCTGTGAAAAGTCACTAC
CCCAATGTGCCAGTGATATTCATGACCGCTCATGGTTCGATTGATACCGCAGTGGAAGCGATGCGTCACGGTGCCCAAGA
TTTCTTGATCAAACCTTGTGAAGCAGACCGCTTGCGCGTCACGGTTAACAACGCCATACGTAAAGCTAGCAAACTAAAAA
ATGAGGCTGGTAACCCGGGTAATCAGAACTACCAAGGTTTTATCGGCAGCAGTCAAACCATGCAATCAGTCTATCGAACC
ATTGACTCAGCGGCCTCCAGTAAAGCTAGTATTTTTATTACTGGCGAAAGTGGTACGGGTAAAGAGGTGTGCGCAGAAGC
GATTCATGCGGCCAGTAAACGTGGCGATAAACCCTTCATTGCGATTAACTGCGCCGCCATTCCTAAAGACTTAATAGAGA
GTGAACTCTTTGGCCACGTGAAAGGCGCATTTACTGGCGCAGCGACCGATCGCCAAGGCGCAGCCGAGTTGGCTGATGGC
GGCACACTGTTTTTGGATGAACTGTGTGAAATGGATTTGGATTTGCAGACCAAGCTGTTGCGCTTTATCCAAACGGGCAC
ATTCCAGAAAGTGGGCTCATCGAAGATGAAAAGTGTCGATGTTCGTTTTGTCTGCGCTACCAACCGCGATCCATGGAAAG
AGGTACAAGAGGGTCGTTTTCGTGAAGATTTGTACTATCGTCTTTATGTGATCCCATTGCATTTACCACCGCTACGCGAG
CGAGGCGATGACGTTATTGAAATTGCTTACTCTTTGCTCGGCTTTATGTCTAAAGAAGAAGGCAAAGGTTTTGTCCGCTT
AGCGCCAGAGGTTGTGGAGCGTTTTACGCGCTATGAATGGCCGGGTAATGTGCGTCAACTGCAAAACGTGTTGCGGAATG
TGGTGGTATTGAACCACGGCAACGAGATCGAACTGAGCATGTTACCGCCACCGCTAAATCAAGTCGTGGATAACAAGATC
CGATTAGCAAACCTAACGACGGAAACGCGCAAGGAAAATATAACCGTGCACGATATTTTTCCTTTATGGATGACGGAAAC
GCGCAAGGAAAATATAACCGTGCACGATATTTTTCCTTTATGGATGACGGAAAAGCAAGCCATCGAACAAGCGATAGAAG
CGTGTGATGGTAATATTCCTAAAGCAGCCAGTTATTTAGACGTTAGCCCTTCAACGATCTACCGCAAGCTTCAAGCGTGG
AACAGTAGAGAGAACTCATAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6QUN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

85.225

96.091

0.819

Multiple sequence alignment