Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VANGNB10_RS08190 Genome accession   NZ_LK021130
Coordinates   545777..546295 (+) Length   172 a.a.
NCBI ID   WP_010319518.1    Uniprot ID   A0A233HL62
Organism   Vibrio anguillarum strain NB10     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 540777..551295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VANGNB10_RS08180 (TVA2097) - 541189..544044 (+) 2856 WP_013857697.1 M16 family metallopeptidase -
  VANGNB10_RS08185 (TVA2096) gshA 544147..545712 (+) 1566 WP_029189845.1 glutamate--cysteine ligase -
  VANGNB10_RS08190 (TVA2095) luxS 545777..546295 (+) 519 WP_010319518.1 S-ribosylhomocysteine lyase Regulator
  VANGNB10_RS08195 (TVA2094) - 546379..547653 (-) 1275 WP_017046996.1 HlyC/CorC family transporter -
  VANGNB10_RS08200 (TVA2093) - 547737..548531 (-) 795 WP_026027563.1 cytochrome C assembly family protein -
  VANGNB10_RS08205 (TVA2092) ffh 548834..550216 (+) 1383 WP_013857692.1 signal recognition particle protein -
  VANGNB10_RS08210 (TVA2091) rpsP 550431..550679 (+) 249 WP_010319522.1 30S ribosomal protein S16 -
  VANGNB10_RS08215 (TVA2090) rimM 550709..551263 (+) 555 WP_013857691.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18955.76 Da        Isoelectric Point: 5.2114

>NTDB_id=1113426 VANGNB10_RS08190 WP_010319518.1 545777..546295(+) (luxS) [Vibrio anguillarum strain NB10]
MPLLDSFTVDHTRMHAPAVRVAKNMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGHDVEIIDISP
MGCRTGFYMSLIGAPTEAQVAQAWLAAMHDVLKVESQDQIPELNEYQCGTASMHSLTEAKEIAQAIITAGIAVNKNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1113426 VANGNB10_RS08190 WP_010319518.1 545777..546295(+) (luxS) [Vibrio anguillarum strain NB10]
ATGCCATTACTCGACAGTTTTACTGTAGATCACACTCGTATGCATGCGCCTGCGGTACGTGTGGCAAAAAATATGCAGAC
GCCTAAAGGGGATACAATCACCGTATTTGATCTCCGTTTTACTGCTCCAAACAAAGATATTCTTTCAGAAAAAGGGATCC
ACACTTTAGAACATTTATATGCTGGCTTTATGCGCGCGCACTTAAATGGTCATGATGTAGAAATCATCGACATCTCACCT
ATGGGCTGCCGCACAGGTTTTTACATGAGTTTGATTGGCGCGCCAACAGAAGCGCAAGTGGCGCAAGCGTGGTTAGCGGC
GATGCATGATGTGCTAAAAGTAGAGAGCCAAGATCAGATCCCTGAACTAAACGAATACCAATGTGGTACAGCCTCAATGC
ACTCGTTAACAGAAGCTAAAGAGATTGCTCAAGCGATTATCACAGCAGGTATTGCGGTGAATAAAAATGATGAGCTTGCT
TTACCTGAGTCGATGCTCAAAGAGCTGAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A233HL62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878

Multiple sequence alignment