Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   VANGNB10_RS08055 Genome accession   NZ_LK021130
Coordinates   519328..520329 (+) Length   333 a.a.
NCBI ID   WP_017046716.1    Uniprot ID   Q4G3U1
Organism   Vibrio anguillarum strain NB10     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 514328..525329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VANGNB10_RS08025 (TVA2120) ispD 514471..515202 (+) 732 WP_010320457.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  VANGNB10_RS08030 (TVA2119) ispF 515195..515680 (+) 486 WP_013857718.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  VANGNB10_RS08035 (TVA2118) truD 515835..516932 (+) 1098 WP_013857717.1 tRNA pseudouridine(13) synthase TruD -
  VANGNB10_RS08040 (TVA2117) surE 516945..517691 (+) 747 WP_010320454.1 5'/3'-nucleotidase SurE -
  VANGNB10_RS08045 (TVA2116) - 517691..518317 (+) 627 WP_013857716.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  VANGNB10_RS08050 (TVA2115) nlpD 518323..519255 (+) 933 WP_041769244.1 murein hydrolase activator NlpD -
  VANGNB10_RS08055 (TVA2114) rpoS 519328..520329 (+) 1002 WP_017046716.1 RNA polymerase sigma factor RpoS Regulator
  VANGNB10_RS08060 (TVA2113) mutS 520446..523034 (-) 2589 WP_029189955.1 DNA mismatch repair protein MutS -
  VANGNB10_RS08065 (TVA2112) cysM 523277..524167 (-) 891 WP_026027976.1 cysteine synthase CysM -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 38302.21 Da        Isoelectric Point: 4.4454

>NTDB_id=1113423 VANGNB10_RS08055 WP_017046716.1 519328..520329(+) (rpoS) [Vibrio anguillarum strain NB10]
MSISNAVTKVEEFEDQEIMDSIEVDEELTTTKSQSDDDVQIEDAKEGFDASTKSLDATQMYLSEIGFSPLLTAQEEVLYA
RRSLRGDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMN
QTRTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAFQLDKPVEDVSKMLRLNERISSVDTPIGGDGDKALLDIIPD
TNNSDPEISTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQ
GLNMEALFNVEYD

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1113423 VANGNB10_RS08055 WP_017046716.1 519328..520329(+) (rpoS) [Vibrio anguillarum strain NB10]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAGTTTGAAGACCAAGAGATCATGGATTCGATTGAGGTTGATGAAGA
ACTCACCACCACTAAAAGCCAAAGCGATGACGATGTTCAAATCGAAGATGCCAAAGAAGGGTTTGATGCGTCAACAAAAA
GCTTAGATGCAACACAGATGTATCTTAGCGAGATTGGTTTTTCTCCATTATTAACAGCTCAAGAAGAAGTACTTTATGCT
CGTCGTTCACTGAGAGGCGATGAAGCTGCTCGTAAACGCATGATCGAAAGTAACTTACGTTTGGTCGTTAAAATTTCTCG
CCGTTATGGTAATCGTGGCTTAGCTTTACTCGATCTAATTGAAGAGGGTAATTTAGGCTTGATCCGTGCGGTAGAAAAAT
TTGATCCAGAACGTGGCTTTAGATTCTCAACCTATGCTACTTGGTGGATCCGTCAAACCATTGAACGTGCATTAATGAAC
CAAACGCGCACTATCCGTTTGCCAATTCACGTCGTTAAAGAGTTGAATATCTACCTTCGCACGGCTCGCGAGCTATCGCA
GAAGTTAGATCATGAACCTACCGCAGAAGAAATTGCGTTCCAACTGGATAAGCCAGTAGAAGATGTCAGTAAAATGCTAC
GTCTGAACGAGCGTATCAGTTCCGTTGATACACCGATTGGCGGCGATGGTGACAAAGCACTACTCGATATCATCCCAGAT
ACGAACAACTCTGATCCTGAAATTTCTACGCAAGATGATGATATCCGTGAATCACTACTGAATTGGTTAGATGAACTGAA
CCCAAAACAAAAAGAGGTACTTGCACGCCGTTTTGGACTATTAGGTTATGAACCGTCCACCTTAGAAGAAGTCGGGCGCG
AAATTAACTTAACCCGTGAACGAGTTCGTCAAATTCAAGTGGAAGGTCTACGTCGTTTGAGAGAGATCTTGGTTAAACAA
GGCTTGAACATGGAAGCGCTGTTTAATGTTGAATACGACTAA

Domains

Predicted by InterproScan.

Sigma-70, region 4 (Sigma70_r4)

(262-315)

Sigma-70 region 3 (Sigma70_r3)

(174-247)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-89)

Sigma-70 region 2 (Sigma70_r2)

(94-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4G3U1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

86.826

100

0.871

Multiple sequence alignment