Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   VANGNB10_RS01660 Genome accession   NZ_LK021129
Coordinates   340994..342175 (-) Length   393 a.a.
NCBI ID   WP_013868490.1    Uniprot ID   -
Organism   Vibrio anguillarum strain NB10     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 335994..347175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VANGNB10_RS01655 (TVA2846) cqsS 338856..340907 (+) 2052 WP_013868489.1 hybrid sensor histidine kinase/response regulator Regulator
  VANGNB10_RS01660 (TVA2845) cqsA 340994..342175 (-) 1182 WP_013868490.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VANGNB10_RS01665 (TVA2844) - 342375..343349 (-) 975 WP_013868491.1 TDT family transporter -
  VANGNB10_RS01670 (TVA2843) clcA 343498..344895 (-) 1398 WP_013868492.1 H(+)/Cl(-) exchange transporter ClcA -
  VANGNB10_RS01675 (TVA2842) - 345388..346374 (+) 987 WP_010320211.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43543.35 Da        Isoelectric Point: 6.6122

>NTDB_id=1113410 VANGNB10_RS01660 WP_013868490.1 340994..342175(-) (cqsA) [Vibrio anguillarum strain NB10]
MNSRKWKHELPASIQSRIDYFINDLINANANGKHLVLGKRPTKNDIVLQSNDYLSLADHPLIKARLKNAIDKTHDSVFMS
AIFLQDEESKPSLETKFAEFVGFDSCLLSQSGWNANTALLQAVCGPQSNVYIDFFAHMSMWEGARYANANIHPFMHNNCE
HLQKLIARHGPGLIVVDSIYSTIGTIAPLTDLVTIAKEYGCAILVDESHSLGTHGEKGAGLVSELGLTAEVDFITASLAK
TFAYRAGAIWANNNVNHCIPFVGYPAIFSSTILPYEVEALEATLDIIKSADSKRTQLHRNAHTLRRGLNSIGLSVRSESQ
IIALETGDERNTEKVRDYLEENQIFGAVFCRPATSKNKNIIRLSLNSNVTDSQIDTILTVCERAQNDSSLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1113410 VANGNB10_RS01660 WP_013868490.1 340994..342175(-) (cqsA) [Vibrio anguillarum strain NB10]
ATGAATTCACGTAAGTGGAAACACGAACTACCGGCTTCTATACAATCTAGAATTGACTATTTTATCAATGATTTGATTAA
TGCAAATGCTAACGGAAAACATCTAGTCCTAGGGAAAAGGCCAACAAAAAACGACATAGTGTTACAAAGTAATGATTATT
TAAGCTTGGCTGATCATCCATTAATTAAAGCACGGCTGAAAAATGCCATCGATAAAACACATGATAGTGTTTTTATGTCC
GCTATTTTTCTACAAGATGAAGAGTCTAAACCTTCATTAGAAACGAAATTTGCAGAATTTGTAGGCTTTGATAGTTGCCT
TCTTTCTCAATCAGGATGGAATGCTAATACTGCCTTGTTACAAGCCGTGTGCGGGCCACAAAGTAACGTCTACATTGACT
TTTTTGCTCACATGTCAATGTGGGAAGGTGCTCGTTATGCTAATGCCAATATTCACCCATTCATGCACAATAATTGTGAG
CATTTACAAAAACTGATCGCTCGACACGGCCCAGGGCTCATCGTGGTTGATTCGATTTACAGCACTATCGGTACGATTGC
ACCACTCACCGATTTGGTCACTATCGCCAAAGAGTATGGATGCGCCATTTTAGTTGATGAGTCGCATTCACTTGGCACAC
ATGGCGAAAAAGGTGCAGGACTTGTCAGTGAATTAGGGTTAACAGCAGAAGTTGACTTTATTACAGCTAGCCTTGCGAAA
ACGTTCGCGTATCGCGCTGGCGCTATTTGGGCAAATAATAATGTGAATCACTGTATCCCTTTTGTGGGTTATCCCGCTAT
TTTTAGTTCAACTATTTTGCCTTATGAAGTCGAAGCGTTAGAAGCGACATTGGACATTATCAAATCAGCCGATTCTAAAA
GAACTCAGTTGCACCGCAATGCACACACACTGCGTCGGGGACTAAATAGTATAGGGCTAAGCGTACGAAGTGAGTCCCAA
ATCATAGCGCTAGAAACCGGAGATGAACGAAATACAGAAAAAGTTCGCGATTATTTAGAAGAGAATCAAATATTTGGTGC
TGTTTTTTGCAGGCCTGCCACTTCAAAGAATAAAAACATTATTCGGCTTTCGTTAAATAGTAATGTCACTGACTCACAAA
TTGACACCATATTAACCGTGTGTGAAAGGGCCCAAAATGATAGCAGTCTCTATTTCAAGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.475

98.473

0.674

Multiple sequence alignment