Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   HMPREF9318_RS08455 Genome accession   NZ_KB373319
Coordinates   119814..120761 (+) Length   315 a.a.
NCBI ID   WP_006739646.1    Uniprot ID   G5KET0
Organism   Streptococcus urinalis FB127-CNA-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 114814..125761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9318_RS08430 (HMPREF9318_01688) - 115037..115468 (-) 432 WP_006739697.1 hypothetical protein -
  HMPREF9318_RS08435 (HMPREF9318_01689) - 115458..116375 (-) 918 WP_006740166.1 IS1595 family transposase -
  HMPREF9318_RS08440 (HMPREF9318_01690) - 116626..118947 (+) 2322 WP_006738511.1 hypothetical protein -
  HMPREF9318_RS08445 (HMPREF9318_01691) - 118985..119479 (-) 495 WP_006738964.1 hypothetical protein -
  HMPREF9318_RS08455 (HMPREF9318_01693) comYH 119814..120761 (+) 948 WP_006739646.1 class I SAM-dependent methyltransferase Machinery gene
  HMPREF9318_RS08460 (HMPREF9318_01694) - 120826..122019 (+) 1194 WP_006740360.1 acetate kinase -
  HMPREF9318_RS08465 (HMPREF9318_01695) - 122188..123375 (+) 1188 WP_006738434.1 acetate kinase -
  HMPREF9318_RS08470 (HMPREF9318_01696) - 123480..124142 (+) 663 WP_006739173.1 CPBP family intramembrane glutamic endopeptidase -
  HMPREF9318_RS08475 (HMPREF9318_01697) proC 124175..124945 (-) 771 WP_006739347.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 35910.80 Da        Isoelectric Point: 4.6036

>NTDB_id=1113391 HMPREF9318_RS08455 WP_006739646.1 119814..120761(+) (comYH) [Streptococcus urinalis FB127-CNA-2]
MNFEKIEQAYEIILENSQLIQNQLNTHIYDAIIEQNSYFLGAKTDNKTINKNNDILKTLALTSEEWQRVFQFIFIKAGQT
EKLQANHQFTPDTIGFLFVFLIDSLTKGKESLDIIEIGSGTGNLAQTILNYSQNNLNYLGIEIDDLLIDLSASIAEIMSS
STQFIQGDAVRPHILKESDFIIADLPIGYYPNDEIAARYEVASSKEHTYAHHLLMEQSLKYLKKDGFAIMLAPTDLLASQ
QSDLLKSWLKGYASIQAVIALPENLFGNSYMTKSIYILQKQQKSLKETFVFPLSDITNPESLNYFMESFRKWNQD

Nucleotide


Download         Length: 948 bp        

>NTDB_id=1113391 HMPREF9318_RS08455 WP_006739646.1 119814..120761(+) (comYH) [Streptococcus urinalis FB127-CNA-2]
ATGAACTTCGAAAAAATAGAACAAGCTTATGAAATAATACTGGAAAATAGTCAATTGATCCAAAACCAACTTAATACTCA
TATATATGATGCAATTATTGAACAGAATTCCTATTTTTTAGGTGCTAAAACAGATAATAAAACAATTAATAAAAATAATG
ATATATTGAAAACATTAGCTTTAACATCAGAAGAATGGCAAAGAGTTTTTCAATTTATTTTTATCAAAGCAGGGCAAACT
GAAAAATTGCAAGCAAATCATCAATTTACACCAGACACTATTGGTTTTTTATTTGTTTTTCTCATTGATAGTTTAACTAA
AGGTAAAGAATCATTAGACATTATTGAAATTGGCAGTGGAACTGGAAATTTGGCACAAACAATCCTAAATTATAGTCAGA
ATAATTTGAATTACTTAGGAATTGAAATAGATGACTTATTAATTGACTTATCAGCAAGTATTGCTGAGATAATGTCGTCA
AGTACACAATTTATACAAGGTGACGCTGTTAGACCACATATTTTAAAAGAAAGTGACTTCATTATCGCTGATTTACCAAT
TGGTTATTATCCAAATGATGAGATAGCTGCGAGATATGAAGTAGCATCATCTAAAGAACACACTTATGCTCACCATTTAT
TGATGGAACAATCACTAAAATATTTGAAAAAAGATGGTTTTGCTATTATGCTTGCGCCTACTGATTTATTAGCTAGTCAA
CAAAGTGATTTATTAAAAAGCTGGTTAAAAGGATATGCCTCTATACAGGCAGTTATTGCTCTACCAGAAAACCTTTTTGG
AAATAGTTATATGACAAAGTCAATCTATATTTTACAAAAACAGCAAAAAAGTTTGAAAGAAACATTTGTTTTTCCACTAT
CAGATATAACAAATCCTGAAAGTTTAAATTATTTTATGGAAAGTTTCCGAAAATGGAATCAAGACTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KET0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

60

100

0.6
  comYH Streptococcus mutans UA140

60

100

0.6

Multiple sequence alignment