Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB5N06_RS18180 Genome accession   NZ_JBFSET010000001
Coordinates   3551637..3552233 (-) Length   198 a.a.
NCBI ID   WP_023312915.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain JH426Kpn     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3546637..3557233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5N06_RS18165 (AB5N06_18140) helD 3546845..3548899 (-) 2055 WP_023312916.1 DNA helicase IV -
  AB5N06_RS18170 (AB5N06_18145) - 3549024..3549470 (+) 447 WP_002898425.1 YccF domain-containing protein -
  AB5N06_RS18175 (AB5N06_18150) yccS 3549488..3551623 (+) 2136 WP_002898422.1 YccS family putative transporter -
  AB5N06_RS18180 (AB5N06_18155) sxy/tfoX 3551637..3552233 (-) 597 WP_023312915.1 TfoX/Sxy family DNA transformation protein Regulator
  AB5N06_RS18185 (AB5N06_18160) sulA 3552582..3553091 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  AB5N06_RS18190 (AB5N06_18165) ompA 3553444..3554514 (+) 1071 WP_002898408.1 porin OmpA -
  AB5N06_RS18195 (AB5N06_18170) matP 3554646..3555098 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AB5N06_RS18200 (AB5N06_18175) - 3555284..3557041 (+) 1758 WP_016529118.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22515.13 Da        Isoelectric Point: 10.2361

>NTDB_id=1113316 AB5N06_RS18180 WP_023312915.1 3551637..3552233(-) (sxy/tfoX) [Klebsiella pneumoniae strain JH426Kpn]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDNTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1113316 AB5N06_RS18180 WP_023312915.1 3551637..3552233(-) (sxy/tfoX) [Klebsiella pneumoniae strain JH426Kpn]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATAATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment