Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ABCO29_RS16165 Genome accession   NZ_JAQIYQ010000001
Coordinates   3511831..3513150 (+) Length   439 a.a.
NCBI ID   WP_024428879.1    Uniprot ID   -
Organism   Burkholderia pseudomallei strain SCBP007     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3506831..3518150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCO29_RS16135 - 3507342..3507956 (+) 615 WP_004200150.1 50S ribosomal protein L25/general stress protein Ctc -
  ABCO29_RS16140 pth 3508070..3508675 (+) 606 WP_004530939.1 aminoacyl-tRNA hydrolase -
  ABCO29_RS16145 hisC 3508764..3509834 (+) 1071 WP_004530940.1 histidinol-phosphate transaminase -
  ABCO29_RS16150 - 3510013..3510279 (-) 267 WP_004195247.1 YfhL family 4Fe-4S dicluster ferredoxin -
  ABCO29_RS16155 coaD 3510342..3510842 (-) 501 WP_004195249.1 pantetheine-phosphate adenylyltransferase -
  ABCO29_RS16160 rsmD 3510953..3511579 (-) 627 WP_004522861.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ABCO29_RS16165 pilA 3511831..3513150 (+) 1320 WP_024428879.1 signal recognition particle-docking protein FtsY Machinery gene
  ABCO29_RS16170 maiA 3513307..3513951 (-) 645 WP_004522863.1 maleylacetoacetate isomerase -
  ABCO29_RS16175 - 3513948..3514289 (-) 342 WP_009918580.1 hypothetical protein -
  ABCO29_RS16180 nirB 3514336..3516780 (+) 2445 WP_004526056.1 nitrite reductase large subunit NirB -
  ABCO29_RS16185 - 3516856..3517251 (+) 396 WP_004530943.1 nitrite reductase (NAD(P)H) small subunit -

Sequence

Protein


Download         Length: 439 a.a.        Molecular weight: 46400.69 Da        Isoelectric Point: 6.0726

>NTDB_id=1113263 ABCO29_RS16165 WP_024428879.1 3511831..3513150(+) (pilA) [Burkholderia pseudomallei strain SCBP007]
MFSFFKRFKKAPDAAPAEPQQAPDAPRDASRAPASPDAARVDTPAAPQPRDERSENHDRPEHDETPTAEHSRSGAQPAAR
ATPPASAAASEAPVGQPRAAAARASEPAPSVVMTVTPSSNGRHGVVETVEIVPPPAPEPAAKKSWIARLKSGLAKTSSSI
TNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQPL
VMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESGDPAAVIFDAVSAARARN
IDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGG
ILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADALLG

Nucleotide


Download         Length: 1320 bp        

>NTDB_id=1113263 ABCO29_RS16165 WP_024428879.1 3511831..3513150(+) (pilA) [Burkholderia pseudomallei strain SCBP007]
ATGTTCAGTTTCTTCAAACGATTCAAGAAAGCGCCCGATGCCGCCCCGGCCGAGCCGCAGCAAGCGCCCGACGCGCCGCG
GGACGCTTCCCGCGCACCGGCATCGCCCGACGCCGCGCGAGTCGACACGCCGGCCGCGCCGCAGCCGCGCGACGAGCGCA
GCGAAAACCACGATCGCCCCGAGCACGACGAAACGCCGACCGCCGAGCATTCCCGTTCCGGCGCGCAGCCCGCCGCGCGC
GCGACGCCGCCCGCGTCCGCCGCCGCGTCGGAAGCGCCGGTCGGGCAGCCGCGCGCCGCCGCCGCGCGCGCAAGCGAGCC
CGCGCCGTCGGTCGTGATGACGGTCACGCCGTCGTCGAACGGCCGCCACGGCGTCGTCGAGACGGTCGAGATCGTGCCGC
CGCCCGCGCCCGAGCCGGCCGCGAAGAAATCGTGGATCGCGCGGCTGAAGTCCGGCCTCGCGAAGACGAGCTCGAGCATC
ACGAACGTATTCGTCAACACGAAAATCGACGACGCGCTCTACGAGGAGCTCGAGACGGCGCTGCTGATGTCCGACGCCGG
CATCGACGCGACCGAGCATCTGCTCGACGCGCTGCGCGAAAAGGTGCGCGCGGGCCGCCTCACCGATCCGCAGCAGGTGA
AGGACGCGCTGCGCGGGCTGCTCGTCGAGCTGCTGGCGCCGCTCGAGAAGTCGCTCGTGCTCGGCCGCGCGCAGCCGCTC
GTGATGATGATCGCGGGCGTGAACGGCGCCGGCAAGACGACGAGCATCGGCAAGCTCGCGAAGCATCTGCAGAGCTTCGA
TCAATCGGTGCTGCTCGCCGCGGGCGACACGTTTCGCGCCGCCGCGCGCGAGCAGCTCGCGATCTGGGGCGAACGCAACA
ACGTGACCGTCGTCCAGCAGGAAAGCGGCGACCCCGCCGCGGTGATCTTCGATGCGGTCAGCGCCGCGCGCGCGCGCAAC
ATCGACGTGATGATGGCCGACACCGCAGGCCGCCTGCCGACGCAGCTGCATCTGATGGAAGAGCTCCGGAAGGTGAAGCG
CGTGATCGGCAAGGCGCACGACGGCGCGCCGCACGAGGTGCTGCTCGTGATCGACGCGAACACCGGCCAGAACGCGCTCG
CGCAGGTAAAGGCGTTCGACGACGCGCTCGGCCTCACGGGCCTCATCGTCACGAAGCTCGACGGCACCGCGAAGGGCGGC
ATCCTCGCCGCGATCGCGCGCCAGCGGCCGATTCCGGTGTACTTCATCGGCATCGGCGAGAAGGTCGAGGATCTGCAGCC
GTTCAGCGCGGAGGAATTCGCGGACGCGCTGCTCGGCTAG

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(158-218)

SRP54-type protein, GTPase domain (SRP54)

(240-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50.113

100

0.506

Multiple sequence alignment