Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ABCQ42_RS16170 Genome accession   NZ_JAQIYP010000001
Coordinates   3511815..3513134 (+) Length   439 a.a.
NCBI ID   WP_024428879.1    Uniprot ID   -
Organism   Burkholderia pseudomallei strain SCBP001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3506815..3518134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCQ42_RS16140 - 3507326..3507940 (+) 615 WP_004200150.1 50S ribosomal protein L25/general stress protein Ctc -
  ABCQ42_RS16145 pth 3508054..3508659 (+) 606 WP_004530939.1 aminoacyl-tRNA hydrolase -
  ABCQ42_RS16150 hisC 3508748..3509818 (+) 1071 WP_004530940.1 histidinol-phosphate transaminase -
  ABCQ42_RS16155 - 3509997..3510263 (-) 267 WP_004195247.1 YfhL family 4Fe-4S dicluster ferredoxin -
  ABCQ42_RS16160 coaD 3510326..3510826 (-) 501 WP_004195249.1 pantetheine-phosphate adenylyltransferase -
  ABCQ42_RS16165 rsmD 3510937..3511563 (-) 627 WP_004522861.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ABCQ42_RS16170 pilA 3511815..3513134 (+) 1320 WP_024428879.1 signal recognition particle-docking protein FtsY Machinery gene
  ABCQ42_RS16175 maiA 3513291..3513935 (-) 645 WP_004522863.1 maleylacetoacetate isomerase -
  ABCQ42_RS16180 - 3513932..3514273 (-) 342 WP_009918580.1 hypothetical protein -
  ABCQ42_RS16185 nirB 3514320..3516764 (+) 2445 WP_004526056.1 nitrite reductase large subunit NirB -
  ABCQ42_RS16190 - 3516840..3517235 (+) 396 WP_004530943.1 nitrite reductase (NAD(P)H) small subunit -

Sequence

Protein


Download         Length: 439 a.a.        Molecular weight: 46400.69 Da        Isoelectric Point: 6.0726

>NTDB_id=1113248 ABCQ42_RS16170 WP_024428879.1 3511815..3513134(+) (pilA) [Burkholderia pseudomallei strain SCBP001]
MFSFFKRFKKAPDAAPAEPQQAPDAPRDASRAPASPDAARVDTPAAPQPRDERSENHDRPEHDETPTAEHSRSGAQPAAR
ATPPASAAASEAPVGQPRAAAARASEPAPSVVMTVTPSSNGRHGVVETVEIVPPPAPEPAAKKSWIARLKSGLAKTSSSI
TNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQPL
VMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESGDPAAVIFDAVSAARARN
IDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGG
ILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADALLG

Nucleotide


Download         Length: 1320 bp        

>NTDB_id=1113248 ABCQ42_RS16170 WP_024428879.1 3511815..3513134(+) (pilA) [Burkholderia pseudomallei strain SCBP001]
ATGTTCAGTTTCTTCAAACGATTCAAGAAAGCGCCCGATGCCGCCCCGGCCGAGCCGCAGCAAGCGCCCGACGCGCCGCG
GGACGCTTCCCGCGCACCGGCATCGCCCGACGCCGCGCGAGTCGACACGCCGGCCGCGCCGCAGCCGCGCGACGAGCGCA
GCGAAAACCACGATCGCCCCGAGCACGACGAAACGCCGACCGCCGAGCATTCCCGTTCCGGCGCGCAGCCCGCCGCGCGC
GCGACGCCGCCCGCGTCCGCCGCCGCGTCGGAAGCGCCGGTCGGGCAGCCGCGCGCCGCCGCCGCGCGCGCAAGCGAGCC
CGCGCCGTCGGTCGTGATGACGGTCACGCCGTCGTCGAACGGCCGCCACGGCGTCGTCGAGACGGTCGAGATCGTGCCGC
CGCCCGCGCCCGAGCCGGCCGCGAAGAAATCGTGGATCGCGCGGCTGAAGTCCGGCCTCGCGAAGACGAGCTCGAGCATC
ACGAACGTATTCGTCAACACGAAAATCGACGACGCGCTCTACGAGGAGCTCGAGACGGCGCTGCTGATGTCCGACGCCGG
CATCGACGCGACCGAGCATCTGCTCGACGCGCTGCGCGAAAAGGTGCGCGCGGGCCGCCTCACCGATCCGCAGCAGGTGA
AGGACGCGCTGCGCGGGCTGCTCGTCGAGCTGCTGGCGCCGCTCGAGAAGTCGCTCGTGCTCGGCCGCGCGCAGCCGCTC
GTGATGATGATCGCGGGCGTGAACGGCGCCGGCAAGACGACGAGCATCGGCAAGCTCGCGAAGCATCTGCAGAGCTTCGA
TCAATCGGTGCTGCTCGCCGCGGGCGACACGTTTCGCGCCGCCGCGCGCGAGCAGCTCGCGATCTGGGGCGAACGCAACA
ACGTGACCGTCGTCCAGCAGGAAAGCGGCGACCCCGCCGCGGTGATCTTCGATGCGGTCAGCGCCGCGCGCGCGCGCAAC
ATCGACGTGATGATGGCCGACACCGCAGGCCGCCTGCCGACGCAGCTGCATCTGATGGAAGAGCTCCGGAAGGTGAAGCG
CGTGATCGGCAAGGCGCACGACGGCGCGCCGCACGAGGTGCTGCTCGTGATCGACGCGAACACCGGCCAGAACGCGCTCG
CGCAGGTAAAGGCGTTCGACGACGCGCTCGGCCTCACGGGCCTCATCGTCACGAAGCTCGACGGCACCGCGAAGGGCGGC
ATCCTCGCCGCGATCGCGCGCCAGCGGCCGATTCCGGTGTACTTCATCGGCATCGGCGAGAAGGTCGAGGATCTGCAGCC
GTTCAGCGCGGAGGAATTCGCGGACGCGCTGCTCGGCTAG

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(158-218)

SRP54-type protein, GTPase domain (SRP54)

(240-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50.113

100

0.506

Multiple sequence alignment