Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6K66_RS20070 Genome accession   NZ_JAFFQV010000001
Coordinates   4318626..4319249 (+) Length   207 a.a.
NCBI ID   WP_004100775.1    Uniprot ID   A0AAD3YQU3
Organism   Klebsiella oxytoca strain FDAARGOS_1336     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4313626..4324249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K66_RS20050 (I6K66_20050) - 4313725..4315482 (-) 1758 WP_017146190.1 AAA family ATPase -
  I6K66_RS20055 (I6K66_20055) matP 4315668..4316120 (+) 453 WP_004100768.1 macrodomain Ter protein MatP -
  I6K66_RS20060 (I6K66_20060) ompA 4316231..4317301 (-) 1071 WP_004100770.1 porin OmpA -
  I6K66_RS20065 (I6K66_20065) sulA 4317655..4318164 (-) 510 WP_024273980.1 SOS-induced cell division inhibitor SulA -
  I6K66_RS20070 (I6K66_20070) sxy/tfoX 4318626..4319249 (+) 624 WP_004100775.1 TfoX/Sxy family DNA transformation protein Regulator
  I6K66_RS20075 (I6K66_20075) yccS 4319237..4321372 (-) 2136 WP_004100780.1 YccS family putative transporter -
  I6K66_RS20080 (I6K66_20080) - 4321390..4321836 (-) 447 WP_004100782.1 YccF domain-containing protein -
  I6K66_RS20085 (I6K66_20085) helD 4321959..4324013 (+) 2055 WP_016808043.1 DNA helicase IV -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23688.71 Da        Isoelectric Point: 10.2095

>NTDB_id=1112788 I6K66_RS20070 WP_004100775.1 4318626..4319249(+) (sxy/tfoX) [Klebsiella oxytoca strain FDAARGOS_1336]
MKKLVCLRIHQFRACLSPLGKISCRPLFGGYSLAIDNTVFAMMAEGEIYLRVCEQSAQYRVAHKNPLLKMQKNGRLVALK
YYHIDEGLWRDSKMLFHLSALSLQTARNEKHRQRHSGRLKNLPNISFHMELQLINSGIKDELTLRKIGAKEAWLRLRKMN
KALTVNVLYSLEGAIAGVHAATLPTQQRQELEEWAAVQVQEMEAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1112788 I6K66_RS20070 WP_004100775.1 4318626..4319249(+) (sxy/tfoX) [Klebsiella oxytoca strain FDAARGOS_1336]
ATGAAGAAACTCGTATGTCTTAGGATCCATCAGTTTCGGGCATGTTTGTCTCCATTAGGAAAAATAAGCTGTCGGCCCTT
ATTTGGTGGCTATAGCCTGGCGATAGATAATACCGTGTTTGCCATGATGGCTGAGGGGGAGATCTATCTTCGGGTTTGTG
AGCAGAGTGCGCAGTATCGCGTGGCGCATAAAAACCCGCTGTTGAAGATGCAGAAGAATGGCCGTCTGGTTGCGCTTAAG
TACTATCATATAGATGAAGGGCTTTGGCGTGACAGCAAAATGCTTTTTCATTTATCAGCGCTATCATTACAGACCGCTCG
TAATGAAAAACATCGGCAGCGACATTCCGGAAGATTAAAGAATCTTCCAAATATTAGTTTTCACATGGAGCTCCAGTTGA
TTAATTCAGGTATCAAAGATGAATTAACGCTGCGAAAAATTGGCGCTAAAGAAGCCTGGCTCAGACTACGAAAAATGAAT
AAAGCGCTAACGGTAAACGTCCTTTATTCATTAGAGGGAGCTATTGCGGGCGTGCATGCGGCCACGCTCCCGACGCAACA
GCGTCAGGAGCTTGAGGAGTGGGCGGCGGTACAGGTACAGGAGATGGAGGCCTACTCAGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(15-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.308

94.203

0.493

Multiple sequence alignment