Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   IEC97_RS20360 Genome accession   NZ_JAEHGC010000010
Coordinates   100065..101882 (-) Length   605 a.a.
NCBI ID   WP_198312388.1    Uniprot ID   -
Organism   Neobacillus cucumis strain T4S4     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 95065..106882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC97_RS20330 (IEC97_20330) - 95412..96206 (-) 795 WP_133338358.1 NAD kinase -
  IEC97_RS20335 (IEC97_20335) - 96229..96867 (-) 639 WP_198312384.1 GTP pyrophosphokinase family protein -
  IEC97_RS20340 (IEC97_20340) - 96888..97247 (-) 360 WP_198312385.1 hypothetical protein -
  IEC97_RS20345 (IEC97_20345) - 97359..97943 (+) 585 WP_198312386.1 CYTH domain-containing protein -
  IEC97_RS20350 (IEC97_20350) - 98290..98694 (+) 405 WP_198312387.1 globin -
  IEC97_RS20355 (IEC97_20355) - 98691..99560 (+) 870 WP_232490188.1 ClpXP adapter SpxH family protein -
  IEC97_RS20360 (IEC97_20360) pepF 100065..101882 (-) 1818 WP_198312388.1 oligoendopeptidase F Regulator
  IEC97_RS20365 (IEC97_20365) - 101997..103193 (-) 1197 WP_198312389.1 competence protein CoiA family protein -
  IEC97_RS20370 (IEC97_20370) cls 103285..104796 (-) 1512 WP_198312475.1 cardiolipin synthase -
  IEC97_RS20375 (IEC97_20375) mecA 104870..105541 (-) 672 WP_198312390.1 adaptor protein MecA -
  IEC97_RS20380 (IEC97_20380) spxA 105884..106279 (-) 396 WP_026574539.1 transcriptional regulator SpxA -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69341.06 Da        Isoelectric Point: 4.8688

>NTDB_id=1112751 IEC97_RS20360 WP_198312388.1 100065..101882(-) (pepF) [Neobacillus cucumis strain T4S4]
MANETAVKTLPARGEIPVEETWKLEDIFANDEAWEKEFQEVKSQIPGAKQFEGKLGESAENLFKALQYQDQLLESLGKLY
AYSHMRYDQDTTNSFYQGLDDRMKNLYAQAGSALAFIVPELLSIDESKLKGFLTEKPDLKLYEHAIEEINLQRPHVLSAE
QEALLAEAGEVMDASSNTFGMLNNADLAFPSIKDENGEEVEITHGRYIRFLESSDQRVRRDAFKAVYETYGNFRNTFAST
LSGNVKKDNFNARIRKYESARQAALAANNIPESVYDNLVKAVSENLHLLQRYIKLRKKVLGLSELHMYDLYTPLVKDVKM
EIKYEEAKDIVLKGLAPLGEEYAKVLKEGFENRWVDVHENKGKRSGAYSSGSYGTNPYILMNWQDNVNNLFTLAHELGHS
VHSYYTRKSQAYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDEQKRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKLQ
NNEALTAELLTKEYFELNKKYFGEEDIVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIGF
LSAGSSDYPIEVLKKAGVDMTSSQPIKDACKVFEEKLNELEQLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1112751 IEC97_RS20360 WP_198312388.1 100065..101882(-) (pepF) [Neobacillus cucumis strain T4S4]
ATGGCAAATGAAACTGCAGTTAAAACGCTGCCGGCTAGAGGGGAAATTCCTGTTGAAGAAACCTGGAAATTAGAAGATAT
ATTTGCAAATGATGAGGCATGGGAAAAGGAATTCCAAGAGGTAAAAAGCCAAATCCCTGGAGCAAAACAATTTGAAGGAA
AACTTGGAGAGAGTGCGGAAAATCTATTTAAAGCCCTTCAGTATCAGGATCAGCTTCTTGAAAGCCTTGGAAAGCTTTAT
GCCTATTCCCATATGAGATATGATCAAGATACAACGAATTCATTTTATCAAGGCTTAGATGATCGGATGAAAAACCTTTA
CGCTCAAGCGGGTAGTGCGCTTGCTTTTATTGTTCCGGAACTATTATCGATTGATGAAAGTAAACTTAAAGGCTTTTTAA
CGGAGAAGCCTGATTTAAAGCTTTACGAGCATGCAATTGAGGAAATTAATCTGCAAAGGCCACATGTTCTTTCAGCTGAA
CAGGAAGCATTGTTAGCCGAAGCAGGCGAGGTGATGGATGCTTCGAGCAATACATTTGGGATGCTGAACAATGCTGATTT
GGCGTTTCCATCCATTAAAGATGAAAATGGGGAAGAGGTTGAAATTACCCATGGCCGCTACATACGATTCTTAGAAAGCT
CTGACCAGCGCGTCCGCCGGGATGCCTTTAAAGCGGTGTATGAAACCTATGGTAATTTCCGCAATACATTCGCAAGCACC
CTTAGTGGCAATGTGAAGAAGGATAATTTTAATGCAAGAATTAGAAAGTATGAATCAGCAAGGCAAGCAGCATTAGCGGC
CAATAATATCCCTGAAAGTGTATATGATAATTTGGTTAAAGCAGTAAGCGAAAACTTGCATTTACTGCAGCGATATATAA
AGCTGCGTAAGAAGGTTCTAGGGCTTAGTGAACTGCATATGTACGATTTATATACACCACTTGTAAAAGATGTAAAAATG
GAGATTAAATATGAGGAAGCAAAGGATATTGTTTTAAAAGGACTAGCACCATTAGGAGAAGAGTATGCTAAAGTTTTAAA
AGAAGGCTTTGAAAACCGCTGGGTAGATGTTCACGAAAATAAAGGGAAACGAAGCGGCGCGTATTCTTCTGGCTCCTATG
GGACGAATCCCTATATCCTCATGAACTGGCAGGATAATGTGAACAATCTATTCACACTTGCGCATGAATTGGGGCATTCC
GTGCATAGCTACTACACACGGAAATCACAAGCCTATCCATATGGGAACTATTCAATATTCGTTGCCGAAGTGGCATCGAC
CTGTAATGAGGCATTGTTAAATGATTATTTATTAAAGACCATTGATGATGAACAGAAACGGATTTACTTGTTAAACCATT
ACTTAGAAGGATTTAGAGGAACTGTGTTCCGGCAAACCATGTTTGCAGAATTTGAACACCTTATCCATCAAAAACTTCAA
AATAACGAGGCGTTAACGGCTGAATTATTGACAAAAGAATACTTTGAACTAAACAAAAAGTATTTTGGAGAAGAGGATAT
TGTCATTGATGAAGAAATTGGCTTAGAATGGTCAAGAATCCCTCATTTCTATTACAATTATTATGTTTATCAATATGCTA
CTGGATTTAGTGCAGCAACCGCATTAAGCAAGCAAATTTTAGAGGAAGGAGAGCCTGCTGTAAAGCGCTATATTGGGTTC
CTTAGTGCAGGAAGCTCTGATTATCCAATTGAAGTCCTTAAGAAGGCAGGAGTGGACATGACAAGCTCCCAGCCAATTAA
GGATGCCTGCAAGGTATTTGAAGAAAAACTGAACGAGCTCGAACAGTTGTTGTCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.663

98.182

0.488

Multiple sequence alignment