Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   IEC97_RS03760 Genome accession   NZ_JAEHGC010000001
Coordinates   712498..714873 (-) Length   791 a.a.
NCBI ID   WP_198309295.1    Uniprot ID   -
Organism   Neobacillus cucumis strain T4S4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 707498..719873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC97_RS03740 (IEC97_03740) - 707589..709109 (+) 1521 WP_198309291.1 SH3 domain-containing protein -
  IEC97_RS03745 (IEC97_03745) dtd 709144..709587 (-) 444 WP_198309292.1 D-aminoacyl-tRNA deacylase -
  IEC97_RS03750 (IEC97_03750) - 709600..711795 (-) 2196 WP_198309293.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  IEC97_RS03755 (IEC97_03755) - 712008..712520 (-) 513 WP_198309294.1 adenine phosphoribosyltransferase -
  IEC97_RS03760 (IEC97_03760) recJ 712498..714873 (-) 2376 WP_198309295.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  IEC97_RS03765 (IEC97_03765) secDF 714992..717256 (-) 2265 WP_198309296.1 protein translocase subunit SecDF -
  IEC97_RS03770 (IEC97_03770) - 717555..717851 (-) 297 WP_198309571.1 post-transcriptional regulator -
  IEC97_RS03775 (IEC97_03775) spoVB 717989..719539 (+) 1551 WP_198309297.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 88759.56 Da        Isoelectric Point: 5.4030

>NTDB_id=1112722 IEC97_RS03760 WP_198309295.1 712498..714873(-) (recJ) [Neobacillus cucumis strain T4S4]
MLKSKTRWIVRESDQAKTKEIAAELKITPLVASLLVNRGLDTVDSARFFLFGKEQFHDPYLLKGMDLAVKRINEAIEKQE
PILIFGDYDADGVSSTTVLMITLRDLGANVQFYIPNRFTEGYGPNENAFRHAAENGIRLIITVDTGISAIHEANIAKELG
LDLIITDHHEPGPILPEALAIIHPKLPDSVYPFRELAGVGVAFKLAHALYGRLPEHLFEIAVIGTIADLVSLKDENRLIA
KKGLENLKMTNNIGLKAIFTLAGVDNKSINEETIGFTLAPRINAVGRLENADLAVELLLSQDPEEARSLAEEMDSLNKSR
QSIVNTITAEAIEEVEKNYPIDSNHVLVIGKEGWNAGVIGIVASRLVEKYYRPTIVLSFDKEKGLAKGSARSISGFDLFK
NLSTCREILPHFGGHPMAAGMTLTIDDVAELRSRLNSLAKEQLSDADFIPVTYLDHEVRLEDINLSTLDELNLLSPFGMD
NPKPKVLINEVAISTMRKIGSDQNHLKVLVNENGANLDGVGFGLGTLVDHISPSSKISLIGELSINEWNNIRKPQIFVQD
IAVNSWQLFDHRGGKRLSHLAGSVPKENRKFILFKKELYEKIDSELIEDVVIIDHSEAAKDLDLTETNTVLVDFPTSKEI
LFDLFRGKQPARIYAYLYKQSSDFLSTIPTRDHFKWFYAFLLKKGPIDLRRYGDEIVKHRGWSQETVTFMAKVFSDLEFV
TITNGFITLNKQAQKRDLTDSITYQTKQAQLLLEKDLLFSSFQQLKDWFDQVIHESVETEEEKTNGFKTIY

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=1112722 IEC97_RS03760 WP_198309295.1 712498..714873(-) (recJ) [Neobacillus cucumis strain T4S4]
ATGTTAAAGTCAAAAACAAGATGGATTGTTCGAGAGTCCGACCAAGCGAAAACAAAAGAAATCGCAGCTGAACTGAAAAT
TACACCTCTTGTAGCATCGCTGCTTGTTAACCGCGGATTAGATACCGTCGATTCTGCACGGTTTTTTTTATTTGGCAAGG
AACAGTTTCATGACCCTTATCTTTTAAAAGGTATGGACCTTGCTGTAAAAAGAATAAATGAGGCTATAGAAAAACAAGAA
CCGATCTTAATTTTTGGGGATTATGATGCGGATGGTGTAAGCAGTACGACAGTCTTAATGATCACCCTTCGTGATTTAGG
GGCCAATGTTCAATTTTACATTCCAAATCGTTTTACAGAAGGCTATGGCCCGAATGAAAATGCCTTCCGACATGCAGCTG
AAAATGGAATTAGATTAATTATAACGGTTGATACAGGAATTTCTGCGATACATGAAGCAAACATAGCAAAAGAACTGGGG
CTTGATCTCATCATTACCGATCACCATGAACCGGGTCCAATCCTGCCTGAGGCACTTGCCATAATCCATCCAAAGCTGCC
GGATAGCGTTTATCCTTTCCGTGAGCTCGCCGGTGTTGGCGTTGCTTTCAAACTGGCCCATGCCCTTTATGGCCGGCTCC
CTGAACATTTATTTGAAATTGCAGTAATAGGAACAATTGCTGACTTAGTATCCCTGAAGGATGAAAATCGTCTTATTGCC
AAAAAAGGTTTAGAAAACCTTAAAATGACAAATAATATTGGTTTAAAAGCGATTTTTACATTAGCGGGAGTTGACAATAA
GTCGATTAACGAAGAAACCATTGGATTTACTCTGGCACCGAGAATCAATGCAGTTGGGCGCTTAGAAAATGCCGATTTAG
CTGTAGAGCTTCTTCTTTCACAGGATCCTGAAGAGGCTAGAAGCTTGGCTGAGGAAATGGATTCTTTAAATAAATCAAGG
CAGTCCATTGTTAATACGATTACAGCTGAAGCCATTGAAGAGGTAGAAAAGAATTATCCGATTGACTCAAATCATGTTCT
TGTCATTGGTAAGGAAGGCTGGAATGCCGGTGTAATCGGGATTGTCGCATCCAGATTGGTGGAGAAATATTATCGACCGA
CGATTGTTTTGAGTTTTGACAAGGAAAAGGGGCTTGCTAAGGGCTCTGCACGGAGCATTTCGGGGTTTGACTTATTTAAG
AATCTTTCAACCTGTCGCGAAATACTGCCTCATTTTGGCGGGCATCCAATGGCGGCAGGGATGACACTTACGATTGATGA
TGTGGCTGAGCTTCGTTCAAGGCTGAATTCACTGGCTAAGGAGCAGCTCTCTGATGCCGACTTTATTCCGGTTACGTATC
TAGACCATGAAGTTAGGCTTGAGGACATCAACCTTTCGACTCTAGATGAATTAAATTTATTATCACCGTTTGGGATGGAC
AATCCAAAGCCAAAGGTGTTAATTAATGAAGTTGCCATTTCAACGATGAGAAAAATTGGCAGTGATCAGAATCATCTAAA
GGTTCTCGTGAACGAAAATGGTGCGAATCTTGATGGAGTTGGTTTTGGGTTAGGGACTTTGGTGGATCATATTTCTCCTT
CTTCTAAAATTTCATTAATCGGAGAATTATCCATCAATGAGTGGAACAATATCCGAAAACCACAAATTTTCGTCCAAGAT
ATTGCCGTCAATTCATGGCAATTATTTGACCATCGCGGCGGAAAACGCTTAAGCCATCTTGCTGGTTCCGTGCCGAAGGA
AAATAGAAAGTTTATTTTGTTTAAAAAGGAACTTTATGAGAAAATAGATTCTGAACTAATTGAAGATGTTGTGATTATTG
ACCATTCCGAAGCGGCAAAGGATTTGGATCTTACTGAAACGAATACGGTTTTAGTTGATTTCCCAACCTCAAAAGAAATC
CTCTTTGATTTATTTAGAGGAAAACAGCCTGCAAGGATTTATGCATATCTTTATAAACAATCAAGTGATTTTTTAAGCAC
TATTCCAACGCGGGACCATTTTAAATGGTTTTATGCCTTTTTGTTAAAGAAAGGGCCGATTGATCTGAGACGTTATGGTG
ATGAAATTGTGAAACACCGTGGATGGTCGCAGGAAACAGTCACCTTCATGGCAAAGGTATTTTCCGATTTGGAATTTGTT
ACAATAACCAATGGATTTATCACATTGAATAAACAAGCGCAAAAGCGTGATTTAACTGACTCAATTACCTATCAAACTAA
ACAGGCACAACTTTTACTTGAGAAGGATTTATTATTTTCATCTTTTCAGCAGTTGAAGGACTGGTTCGACCAGGTCATTC
ATGAGTCGGTTGAAACTGAGGAGGAAAAGACGAATGGATTTAAAACAATTTATTAG

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-560)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-769)

DHH family (DHH)

(82-224)

DHHA1 domain (DHHA1)

(314-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.789

98.989

0.542

Multiple sequence alignment