Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   IEC97_RS03670 Genome accession   NZ_JAEHGC010000001
Coordinates   692247..694661 (-) Length   804 a.a.
NCBI ID   WP_198309278.1    Uniprot ID   -
Organism   Neobacillus cucumis strain T4S4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 687247..699661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC97_RS03650 (IEC97_03650) - 690176..691255 (-) 1080 WP_198309276.1 AI-2E family transporter -
  IEC97_RS03655 (IEC97_03655) - 691342..691467 (-) 126 WP_232489997.1 YrzQ family protein -
  IEC97_RS03660 (IEC97_03660) - 691534..691725 (-) 192 WP_026572354.1 hypothetical protein -
  IEC97_RS03665 (IEC97_03665) - 691738..692214 (-) 477 WP_198309277.1 PRC-barrel domain-containing protein -
  IEC97_RS03670 (IEC97_03670) recD2 692247..694661 (-) 2415 WP_198309278.1 ATP-dependent RecD-like DNA helicase Machinery gene
  IEC97_RS03675 (IEC97_03675) - 694705..695358 (-) 654 WP_198309279.1 tetratricopeptide repeat protein -
  IEC97_RS03680 (IEC97_03680) mnmA 695497..696615 (-) 1119 WP_198309280.1 tRNA 2-thiouridine(34) synthase MnmA -
  IEC97_RS03685 (IEC97_03685) - 696657..697799 (-) 1143 WP_198309281.1 cysteine desulfurase family protein -
  IEC97_RS03690 (IEC97_03690) - 697845..698264 (-) 420 WP_198309282.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 90814.95 Da        Isoelectric Point: 4.9654

>NTDB_id=1112721 IEC97_RS03670 WP_198309278.1 692247..694661(-) (recD2) [Neobacillus cucumis strain T4S4]
MEKQDSLDLFAEQGKFVKGKHLVTIFHNEQNLYTVLRIRVEETNDQYEDKEAVVTGYFPKIHEQETYIFYGEFKEHPKFG
LQFHTNHFRKDIPQTEQGVITYLSSEMFKGIGKKTAENIVKVLGENAISKILNQPSLLDSIPKLPPDKAKMLYDTLMEHQ
GLEQVMVALNQYGFGPQLSMRIYQAYKEETLGIIQKNPYKLVEDIEGIGFGRADELGYQLGISGNHPDRIKAACLYTLEN
ESMQTGHVYIPAKDLLEKVKNLLEENKRDQIEFLDISNEVIKLEEEGKIIGEEQRVYLPSLYFAEKGLVTNIHRILEQSE
YKEQFPESEFLLALGSLEERLGVEYAPSQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLEPKDYQKKD
EPFPFLLAAPTGRAAKRMSESTGLPAVTIHRLLGFNGTEGFDRDETTPLEGKIIIVDETSMLDIWLANQLFKALPEHIQV
ILVGDEDQLPSVGPGQVLKDLLNSVRIPTVRLTDIYRQAEGSSIIELAHDIKKGFIPANVTVKQPDRSFIRCSTAQVAQV
VEKVALNAKNKGYSAKDIQVLAPMYRGPAGIDRLNVLLQEIFNPNPDGSRKEITFGDVKYRIGDKVLQLVNQPENNVFNG
DIGEIISIIYAKENTEKQDMIYISFEGHEVEYTKQDLTQITHAYCCSVHKSQGSEFPIVILPITRSYYRMLRRNLIYTAI
TRSKQSLILCGEEDALRMGVERADELSRLTTLCQKLQESIPANGSETKMETQIPDGLTLEEALMKVDPMIGMENLTPYDF
MVNN

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=1112721 IEC97_RS03670 WP_198309278.1 692247..694661(-) (recD2) [Neobacillus cucumis strain T4S4]
ATGGAAAAGCAGGACTCACTTGATTTATTTGCCGAACAAGGAAAGTTCGTGAAGGGGAAGCATCTTGTAACGATTTTTCA
TAATGAGCAAAATCTATACACCGTCCTGAGAATTCGAGTGGAAGAAACCAATGACCAATATGAGGACAAAGAAGCAGTGG
TAACGGGTTATTTTCCGAAAATTCACGAACAGGAAACGTATATTTTTTACGGTGAATTTAAGGAACATCCGAAATTTGGT
CTTCAATTTCACACCAATCATTTCCGAAAAGATATTCCTCAAACTGAACAAGGTGTTATTACTTATTTATCAAGTGAAAT
GTTTAAAGGGATTGGCAAAAAGACGGCGGAGAATATTGTTAAAGTATTAGGAGAAAATGCAATTTCAAAAATCCTTAATC
AGCCGTCATTGCTCGACTCTATTCCAAAGCTGCCTCCTGATAAGGCGAAAATGCTTTATGATACGTTAATGGAACATCAG
GGACTTGAACAAGTCATGGTCGCCTTAAATCAATATGGCTTTGGTCCGCAGCTTTCGATGAGAATATATCAAGCTTATAA
GGAGGAAACCCTCGGGATTATTCAAAAAAATCCTTATAAGCTGGTCGAAGATATTGAAGGAATCGGCTTTGGCCGGGCAG
ACGAGCTAGGATATCAGCTTGGCATCTCCGGAAATCACCCAGACCGAATCAAAGCAGCTTGCCTTTACACGCTTGAAAAT
GAAAGCATGCAGACAGGACATGTATACATACCTGCAAAAGACTTATTAGAAAAAGTAAAAAACCTTCTCGAAGAAAACAA
ACGAGATCAAATTGAATTTTTGGATATCTCGAATGAAGTCATTAAGCTTGAAGAAGAGGGGAAAATAATTGGCGAAGAGC
AGCGTGTCTATCTTCCCTCATTATATTTTGCTGAAAAGGGCCTCGTGACCAATATTCATCGAATCTTAGAGCAATCCGAG
TACAAAGAACAATTTCCAGAATCAGAGTTTTTACTTGCACTTGGAAGCCTTGAAGAAAGACTCGGCGTGGAATATGCTCC
CTCGCAAAAAGAAGCAATCCAAACGGCCTTAATGTCCCCGATGCTAATTTTAACAGGCGGTCCCGGCACTGGTAAGACGA
CCGTCATCAAAGGGATTGTCGAGCTTTATGCCGAACTTCATGGCTGCTCCTTAGAACCAAAGGATTATCAAAAGAAAGAC
GAACCCTTTCCTTTTTTACTTGCCGCACCAACGGGCAGAGCCGCGAAAAGGATGAGCGAGTCGACAGGTCTTCCTGCCGT
TACAATTCACCGTTTACTTGGTTTTAATGGAACAGAAGGTTTTGACCGTGATGAAACAACACCGCTTGAAGGAAAAATTA
TTATCGTAGATGAAACGTCCATGCTCGATATTTGGCTGGCAAATCAGTTGTTTAAGGCACTTCCGGAGCATATACAAGTC
ATTTTAGTCGGAGATGAAGATCAATTGCCATCTGTCGGACCAGGGCAGGTTTTAAAAGATCTATTGAATTCAGTAAGAAT
TCCGACGGTTAGATTAACCGATATCTATCGTCAGGCAGAAGGGTCTTCTATCATTGAACTTGCCCACGATATTAAAAAGG
GGTTTATACCGGCTAATGTAACAGTCAAACAACCTGATCGCTCCTTTATCCGCTGTTCAACTGCACAGGTTGCGCAGGTT
GTGGAAAAAGTCGCATTAAATGCAAAAAACAAAGGATATTCGGCAAAGGATATCCAAGTGCTAGCACCGATGTACCGGGG
ACCCGCAGGGATTGACCGCTTAAATGTTTTACTGCAGGAAATTTTTAATCCTAACCCGGATGGTTCGCGTAAAGAAATTA
CTTTCGGCGATGTAAAATATCGAATCGGTGACAAAGTGCTTCAGTTGGTCAATCAGCCGGAAAATAATGTTTTTAACGGT
GATATTGGCGAAATTATTTCGATTATCTATGCAAAAGAAAATACCGAAAAACAAGATATGATTTACATTTCCTTTGAGGG
GCATGAGGTTGAATATACAAAGCAGGATTTGACGCAAATTACTCATGCTTATTGCTGTTCTGTCCATAAGTCGCAGGGAA
GCGAATTTCCGATTGTCATTCTTCCTATAACAAGAAGCTACTACCGAATGCTGCGGCGGAATTTAATTTATACAGCGATT
ACCCGCAGTAAACAATCGTTAATCCTCTGCGGTGAAGAAGATGCCTTAAGAATGGGCGTCGAACGGGCGGATGAATTAAG
CAGACTAACGACCCTTTGCCAAAAGCTGCAAGAATCCATCCCTGCCAATGGAAGCGAAACAAAAATGGAAACACAAATTC
CCGATGGGCTAACATTAGAAGAGGCTTTAATGAAGGTCGATCCAATGATTGGAATGGAAAACCTTACACCTTATGATTTT
ATGGTTAATAACTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-664)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

AAA domain (AAA_30)

(345-553)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.125

99.502

0.618

Multiple sequence alignment