Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | IEC97_RS03050 | Genome accession | NZ_JAEHGC010000001 |
| Coordinates | 578757..579836 (-) | Length | 359 a.a. |
| NCBI ID | WP_286179865.1 | Uniprot ID | - |
| Organism | Neobacillus cucumis strain T4S4 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 573757..584836
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IEC97_RS03010 (IEC97_03010) | - | 574747..575538 (+) | 792 | WP_198309174.1 | YqhG family protein | - |
| IEC97_RS03015 (IEC97_03015) | - | 575571..575756 (-) | 186 | WP_198309175.1 | YqzE family protein | - |
| IEC97_RS03020 (IEC97_03020) | comGG | 575822..576208 (-) | 387 | WP_198309176.1 | competence type IV pilus minor pilin ComGG | - |
| IEC97_RS03025 (IEC97_03025) | comGF | 576205..576684 (-) | 480 | WP_198309177.1 | competence type IV pilus minor pilin ComGF | - |
| IEC97_RS03030 (IEC97_03030) | comGE | 576629..576967 (-) | 339 | WP_198309178.1 | competence type IV pilus minor pilin ComGE | - |
| IEC97_RS03035 (IEC97_03035) | comGD | 576951..577391 (-) | 441 | WP_198309179.1 | competence type IV pilus minor pilin ComGD | - |
| IEC97_RS03040 (IEC97_03040) | comGC | 577388..577720 (-) | 333 | WP_198309180.1 | competence type IV pilus major pilin ComGC | - |
| IEC97_RS03045 (IEC97_03045) | comGB | 577739..578770 (-) | 1032 | WP_198309181.1 | competence type IV pilus assembly protein ComGB | - |
| IEC97_RS03050 (IEC97_03050) | comGA | 578757..579836 (-) | 1080 | WP_286179865.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| IEC97_RS03055 (IEC97_03055) | - | 580097..580792 (+) | 696 | WP_198309182.1 | helix-turn-helix domain-containing protein | - |
| IEC97_RS03060 (IEC97_03060) | - | 580877..581119 (+) | 243 | WP_198309183.1 | DUF2626 domain-containing protein | - |
| IEC97_RS03065 (IEC97_03065) | - | 581160..582245 (-) | 1086 | WP_198309184.1 | SAM-dependent methyltransferase | - |
| IEC97_RS03070 (IEC97_03070) | - | 582399..583034 (-) | 636 | WP_198309185.1 | MBL fold metallo-hydrolase | - |
| IEC97_RS03075 (IEC97_03075) | - | 583283..583459 (+) | 177 | WP_026572464.1 | DUF2759 domain-containing protein | - |
| IEC97_RS03080 (IEC97_03080) | - | 583500..583814 (-) | 315 | WP_198309186.1 | MTH1187 family thiamine-binding protein | - |
Sequence
Protein
Download Length: 359 a.a. Molecular weight: 40582.92 Da Isoelectric Point: 9.0763
>NTDB_id=1112718 IEC97_RS03050 WP_286179865.1 578757..579836(-) (comGA) [Neobacillus cucumis strain T4S4]
MLIVSAIEILANRIIKDATRNQATDIHIIPRKNDTLVQIRLTNKLIPRLSLPKEECDKLISHFKFTANMDIGERRRPQSG
SIFCDVNGQLMGLRLSTLPSNNRESLVIRLLPQQEQIPFHQLSLFPSMTRKLLALLKHAHGLIIFTGPTGSGKTTTLYSL
LNETAHLFHRNVITLEDPIEKNYDSVLQVQVNEKAGVTYATGLKAILRHDPDIIMVGEIRDSETAKIAVRAALTGHLVLS
TMHTRDAKGAVYRLHEFGVNWLEVEQTLIAVTAQRLVELTCPFCQDDCSPFCYSYGRWKRASVFELLSGRNLQSAMRAAK
GENIEPRYKTINQVINKGIALGYIKESEYERLVYNYETS
MLIVSAIEILANRIIKDATRNQATDIHIIPRKNDTLVQIRLTNKLIPRLSLPKEECDKLISHFKFTANMDIGERRRPQSG
SIFCDVNGQLMGLRLSTLPSNNRESLVIRLLPQQEQIPFHQLSLFPSMTRKLLALLKHAHGLIIFTGPTGSGKTTTLYSL
LNETAHLFHRNVITLEDPIEKNYDSVLQVQVNEKAGVTYATGLKAILRHDPDIIMVGEIRDSETAKIAVRAALTGHLVLS
TMHTRDAKGAVYRLHEFGVNWLEVEQTLIAVTAQRLVELTCPFCQDDCSPFCYSYGRWKRASVFELLSGRNLQSAMRAAK
GENIEPRYKTINQVINKGIALGYIKESEYERLVYNYETS
Nucleotide
Download Length: 1080 bp
>NTDB_id=1112718 IEC97_RS03050 WP_286179865.1 578757..579836(-) (comGA) [Neobacillus cucumis strain T4S4]
ATTCTCATTGTCAGCGCTATCGAAATTTTAGCCAATCGAATTATTAAAGATGCCACTCGAAACCAAGCAACCGATATTCA
TATCATTCCGCGAAAGAATGATACACTCGTTCAAATCCGCCTTACGAATAAACTTATTCCTCGGTTATCCCTTCCAAAAG
AAGAATGCGACAAATTAATTTCACATTTTAAATTTACCGCAAACATGGATATTGGGGAAAGAAGACGCCCGCAAAGCGGT
TCAATTTTTTGCGATGTCAACGGTCAATTGATGGGGCTCAGATTATCCACCCTGCCTTCAAACAATCGAGAAAGCCTTGT
TATCCGGCTTTTACCTCAACAAGAACAGATTCCATTTCACCAGCTATCCTTATTCCCTTCAATGACGAGAAAATTACTTG
CCCTTCTTAAACACGCCCACGGGTTAATTATTTTTACCGGGCCGACAGGCAGTGGAAAAACCACTACCTTATATTCACTC
CTCAATGAAACCGCACACTTATTCCATCGGAACGTCATTACACTAGAAGACCCTATCGAAAAAAATTATGATTCCGTCCT
GCAGGTCCAAGTAAACGAAAAAGCGGGGGTCACCTATGCCACCGGATTAAAAGCTATTTTGCGGCATGATCCGGATATCA
TTATGGTAGGAGAAATAAGGGACAGTGAAACAGCAAAAATTGCTGTTCGGGCTGCGCTTACGGGGCATTTAGTTCTGTCC
ACAATGCATACAAGGGACGCGAAGGGAGCGGTTTATCGACTTCATGAATTCGGAGTGAATTGGCTGGAAGTAGAGCAAAC
GCTTATTGCCGTAACGGCACAGCGCTTGGTGGAATTGACCTGTCCATTTTGCCAGGACGACTGTTCGCCATTTTGTTATT
CATATGGTAGATGGAAAAGAGCAAGTGTGTTTGAACTCTTATCAGGGAGGAATTTACAGTCAGCAATGAGGGCTGCAAAG
GGGGAAAATATTGAACCACGCTATAAGACGATCAATCAAGTAATCAATAAGGGAATTGCACTTGGTTATATAAAAGAGTC
AGAATATGAACGGCTGGTATACAATTATGAAACATCGTAA
ATTCTCATTGTCAGCGCTATCGAAATTTTAGCCAATCGAATTATTAAAGATGCCACTCGAAACCAAGCAACCGATATTCA
TATCATTCCGCGAAAGAATGATACACTCGTTCAAATCCGCCTTACGAATAAACTTATTCCTCGGTTATCCCTTCCAAAAG
AAGAATGCGACAAATTAATTTCACATTTTAAATTTACCGCAAACATGGATATTGGGGAAAGAAGACGCCCGCAAAGCGGT
TCAATTTTTTGCGATGTCAACGGTCAATTGATGGGGCTCAGATTATCCACCCTGCCTTCAAACAATCGAGAAAGCCTTGT
TATCCGGCTTTTACCTCAACAAGAACAGATTCCATTTCACCAGCTATCCTTATTCCCTTCAATGACGAGAAAATTACTTG
CCCTTCTTAAACACGCCCACGGGTTAATTATTTTTACCGGGCCGACAGGCAGTGGAAAAACCACTACCTTATATTCACTC
CTCAATGAAACCGCACACTTATTCCATCGGAACGTCATTACACTAGAAGACCCTATCGAAAAAAATTATGATTCCGTCCT
GCAGGTCCAAGTAAACGAAAAAGCGGGGGTCACCTATGCCACCGGATTAAAAGCTATTTTGCGGCATGATCCGGATATCA
TTATGGTAGGAGAAATAAGGGACAGTGAAACAGCAAAAATTGCTGTTCGGGCTGCGCTTACGGGGCATTTAGTTCTGTCC
ACAATGCATACAAGGGACGCGAAGGGAGCGGTTTATCGACTTCATGAATTCGGAGTGAATTGGCTGGAAGTAGAGCAAAC
GCTTATTGCCGTAACGGCACAGCGCTTGGTGGAATTGACCTGTCCATTTTGCCAGGACGACTGTTCGCCATTTTGTTATT
CATATGGTAGATGGAAAAGAGCAAGTGTGTTTGAACTCTTATCAGGGAGGAATTTACAGTCAGCAATGAGGGCTGCAAAG
GGGGAAAATATTGAACCACGCTATAAGACGATCAATCAAGTAATCAATAAGGGAATTGCACTTGGTTATATAAAAGAGTC
AGAATATGAACGGCTGGTATACAATTATGAAACATCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
56.091 |
98.329 |
0.552 |
| pilB | Glaesserella parasuis strain SC1401 |
38.997 |
100 |
0.39 |