Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   F601_RS0104815 Genome accession   NZ_AQYA01000030
Coordinates   34974..35684 (-) Length   236 a.a.
NCBI ID   WP_018164535.1    Uniprot ID   -
Organism   Streptococcus henryi DSM 19005     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 29974..40684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F601_RS0104785 - 31031..31678 (+) 648 WP_018164531.1 adenylate kinase -
  F601_RS0104790 infA 31795..32013 (+) 219 WP_001040189.1 translation initiation factor IF-1 -
  F601_RS12880 rpmJ 32039..32155 (+) 117 WP_000868345.1 50S ribosomal protein L36 -
  F601_RS0104795 rpsM 32173..32538 (+) 366 WP_018164532.1 30S ribosomal protein S13 -
  F601_RS0104800 rpsK 32556..32939 (+) 384 WP_001118387.1 30S ribosomal protein S11 -
  F601_RS0104805 - 32987..33925 (+) 939 WP_018164533.1 DNA-directed RNA polymerase subunit alpha -
  F601_RS0104810 rplQ 33940..34326 (+) 387 WP_018164534.1 50S ribosomal protein L17 -
  F601_RS0104815 treR 34974..35684 (-) 711 WP_018164535.1 trehalose operon repressor Regulator
  F601_RS0104820 treP 36018..38039 (+) 2022 WP_018164536.1 PTS system trehalose-specific EIIBC component -
  F601_RS0104825 treC 38134..39759 (+) 1626 WP_018164537.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27504.39 Da        Isoelectric Point: 7.4654

>NTDB_id=111270 F601_RS0104815 WP_018164535.1 34974..35684(-) (treR) [Streptococcus henryi DSM 19005]
MKKYEKIFKDLEEQILRGDYLPEDYLPTENELSKHYQVSRDTIRKALSLLSEANLIQKRHGSGSQVLKHEQINFPVSELT
SYQELINQLGINSKTNVISIDKIIVDDKLSQLTGFKTNSLVWRITRQRVVDGIASVLDIDYLCKSTVPNISREIAEQSIY
KYLEQDLNLDISYAQKEITIDQLTEQDKILLDIGPEHHVVSIKSKVYLANNQQFQFTESRHKLEKFKFVDFARRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=111270 F601_RS0104815 WP_018164535.1 34974..35684(-) (treR) [Streptococcus henryi DSM 19005]
ATGAAGAAATACGAAAAAATTTTTAAAGATCTTGAAGAACAAATTCTTAGAGGTGACTATCTGCCAGAAGACTATCTGCC
AACAGAGAACGAACTATCCAAACATTATCAAGTAAGTCGAGATACAATTCGTAAAGCCTTATCCCTATTATCTGAAGCTA
ATCTTATCCAAAAACGCCACGGTTCTGGTTCTCAAGTCTTAAAACATGAGCAAATCAATTTTCCAGTATCAGAACTCACC
AGTTATCAAGAACTCATAAATCAACTTGGTATCAATTCAAAGACAAACGTGATAAGCATTGATAAAATCATCGTTGATGA
CAAATTATCTCAACTCACAGGTTTTAAAACTAATAGCTTAGTCTGGCGTATCACACGACAGCGAGTCGTTGATGGAATTG
CCTCAGTGCTTGATATTGACTACCTTTGTAAGTCAACAGTTCCAAATATTAGCCGAGAAATAGCAGAGCAGTCAATCTAT
AAATACCTTGAACAAGACCTCAATCTTGATATTTCTTACGCTCAAAAAGAAATCACAATTGACCAACTAACCGAGCAAGA
TAAAATCCTCTTAGACATTGGACCAGAACACCATGTCGTATCTATCAAATCAAAAGTATACCTAGCAAACAATCAACAAT
TTCAATTCACAGAGAGCCGCCATAAGCTTGAAAAATTTAAATTTGTAGACTTTGCCAGACGTAAAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

67.797

100

0.678

Multiple sequence alignment