Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACMCMH_RS11565 Genome accession   NZ_AP038804
Coordinates   2313478..2315280 (-) Length   600 a.a.
NCBI ID   WP_412725744.1    Uniprot ID   -
Organism   Arcobacter sp. 15-2     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2308478..2320280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCMH_RS11550 (ALC152_22380) - 2309589..2311478 (+) 1890 WP_412725738.1 cache domain-containing protein -
  ACMCMH_RS11555 (ALC152_22390) - 2311521..2312444 (+) 924 WP_412725740.1 hypothetical protein -
  ACMCMH_RS11560 (ALC152_22400) - 2312461..2313126 (-) 666 WP_412725742.1 tetratricopeptide repeat protein -
  ACMCMH_RS11565 (ALC152_22410) uvrC 2313478..2315280 (-) 1803 WP_412725744.1 excinuclease ABC subunit UvrC Machinery gene
  ACMCMH_RS11570 (ALC152_22420) - 2315411..2316295 (+) 885 WP_412725746.1 DMT family transporter -
  ACMCMH_RS11575 (ALC152_22430) - 2316308..2316556 (+) 249 WP_412725748.1 GIY-YIG nuclease family protein -
  ACMCMH_RS11580 (ALC152_22440) pnuC 2316626..2317216 (+) 591 WP_412725750.1 nicotinamide riboside transporter PnuC -
  ACMCMH_RS11585 (ALC152_22450) - 2317197..2317958 (+) 762 WP_412725752.1 phosphotransferase -
  ACMCMH_RS11590 - 2317955..2318011 (-) 57 Protein_2248 hypothetical protein -
  ACMCMH_RS11595 (ALC152_22460) - 2318299..2319729 (+) 1431 WP_412725754.1 hypothetical protein -
  ACMCMH_RS11600 (ALC152_22470) - 2320002..2320139 (+) 138 WP_412725756.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69498.39 Da        Isoelectric Point: 9.3076

>NTDB_id=111268 ACMCMH_RS11565 WP_412725744.1 2313478..2315280(-) (uvrC) [Arcobacter sp. 15-2]
MTLEQKLQNLPSSAGIYQYFDKNGKLLYVGKAKVLKNRVKSYFKFTPTLQPSPKLSDRIYKMISEVDNMHYIVVDTENDA
LILENSLIKQLKPKYNILLRDDKTYPYIYMDSNDDFPRLDITRKVIKSKSIRYFGPFSTGSKDLLDSIYEIVPLVQKKSC
IKGGKACMFYQIQKCLAPCEGKVTKVEYQKLLDDALYYLNNKSKIIEKLTVKMEAYSEQFRFEDAMKMRDRIQTISKSQI
KSTLDFAKDEDLDLFAVEQDIDKAVIVKMFIRAGKLISSTHNYVNTTEITSKEDIYKTAIVNYYGEDLPSIPSTVLISDE
VENGEELESFISSKYSKKVSVIYPKIGLKKQLTQTALNNCVELLKINKTTTDNSNYIAIKELFKLYKMPTRFECFDNSQM
MGQAKVGAMIIWDEDKFYKEDYRLYNLEANDEYGQMREMLTRRVERFKENPPPDLWVIDGGKTLLNLAYDIVQSVGVNLD
IIAIAKEKVDAKAHRAKGAAKDILYTKDEVFKLETSDKRLQFCQRLRDEAHRSAITFHKKQKRKEDKQISLLNIKGIGEA
KVKKLLNYFGTFEEIKNSNLEQLSQVLNKKDSELIIKYLN

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=111268 ACMCMH_RS11565 WP_412725744.1 2313478..2315280(-) (uvrC) [Arcobacter sp. 15-2]
TTGACACTTGAACAAAAACTTCAAAATCTTCCCTCGTCTGCAGGTATATATCAATACTTTGATAAAAATGGAAAACTTCT
CTATGTAGGGAAAGCAAAGGTTCTTAAAAATAGAGTAAAGAGCTATTTCAAGTTTACCCCTACTTTACAACCTTCCCCTA
AACTGTCAGATAGAATATATAAGATGATAAGTGAAGTTGACAATATGCACTATATAGTAGTAGATACAGAAAATGATGCA
TTGATTTTAGAAAACTCACTTATTAAACAACTAAAACCTAAGTATAATATTCTCTTGCGAGATGATAAAACATATCCGTA
TATTTATATGGATTCAAATGATGATTTTCCTAGACTTGATATCACGCGTAAAGTTATCAAGAGTAAGAGTATAAGATACT
TTGGACCTTTTAGTACTGGTTCTAAAGATTTACTTGATAGTATTTATGAGATAGTCCCTTTAGTGCAAAAGAAATCCTGT
ATCAAAGGTGGAAAAGCATGTATGTTTTACCAGATACAGAAGTGTTTAGCTCCATGTGAAGGTAAAGTAACTAAAGTAGA
ATATCAAAAGCTTTTAGATGATGCGTTATATTATTTGAATAACAAATCAAAAATTATCGAAAAACTCACTGTAAAAATGG
AAGCATATAGTGAACAGTTTCGTTTTGAAGATGCAATGAAAATGAGAGATAGAATCCAAACAATCTCAAAATCACAAATC
AAATCTACACTAGATTTTGCTAAAGATGAAGATTTAGACTTATTTGCAGTGGAGCAAGATATAGACAAAGCAGTTATAGT
GAAGATGTTTATTCGAGCAGGAAAACTTATCTCAAGTACACATAACTATGTTAATACAACAGAAATTACTTCAAAAGAGG
ATATTTATAAAACAGCAATTGTAAATTATTATGGAGAAGATTTACCCTCTATCCCATCTACTGTATTGATTTCTGATGAG
GTAGAGAACGGTGAGGAATTGGAGAGTTTTATATCATCAAAATACTCGAAAAAAGTATCTGTGATTTATCCAAAAATCGG
ACTAAAAAAACAACTAACACAAACTGCACTTAATAATTGTGTAGAACTGTTAAAGATAAATAAGACTACTACAGATAACA
GTAATTATATAGCAATTAAAGAGCTATTTAAATTATACAAAATGCCTACTAGATTTGAATGTTTTGATAACTCTCAAATG
ATGGGACAAGCCAAGGTAGGTGCTATGATTATATGGGATGAAGACAAGTTCTATAAAGAGGATTATCGCTTATACAATTT
AGAGGCAAATGATGAGTATGGACAAATGAGAGAGATGCTTACACGAAGAGTAGAAAGATTTAAAGAAAATCCGCCACCTG
ATTTATGGGTAATAGATGGTGGAAAAACGCTTCTAAATCTAGCATATGATATTGTGCAAAGTGTTGGTGTAAATCTTGAT
ATTATTGCTATAGCTAAAGAAAAAGTTGATGCAAAAGCGCATCGTGCAAAAGGTGCTGCAAAAGATATTTTATATACAAA
AGATGAAGTGTTTAAACTAGAGACTTCAGATAAACGTTTACAGTTCTGTCAAAGACTACGAGATGAAGCTCATAGGTCTG
CTATAACATTTCATAAGAAACAAAAACGAAAAGAAGATAAACAAATATCTCTACTTAATATAAAAGGTATAGGTGAAGCT
AAAGTAAAAAAATTGTTAAACTATTTTGGAACATTTGAAGAGATAAAAAATTCTAATTTAGAGCAACTTTCACAAGTATT
AAATAAAAAAGACAGTGAATTAATCATCAAATACCTTAACTAA

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(204-237)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(380-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.512

97.667

0.493

Multiple sequence alignment