Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KHO07_RS21320 Genome accession   NZ_HG995459
Coordinates   4679705..4680340 (-) Length   211 a.a.
NCBI ID   WP_162279041.1    Uniprot ID   -
Organism   Pseudomonas sp. PP3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4674705..4685340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHO07_RS21290 murB 4675818..4676837 (-) 1020 WP_212625460.1 UDP-N-acetylmuramate dehydrogenase -
  KHO07_RS21295 - 4676834..4677298 (-) 465 WP_150732325.1 low molecular weight protein-tyrosine-phosphatase -
  KHO07_RS21300 kdsB 4677298..4678062 (-) 765 WP_150732324.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KHO07_RS21305 - 4678059..4678244 (-) 186 WP_007945752.1 Trm112 family protein -
  KHO07_RS21310 lpxK 4678270..4679280 (-) 1011 WP_150732323.1 tetraacyldisaccharide 4'-kinase -
  KHO07_RS21315 - 4679280..4679708 (-) 429 WP_212625461.1 biopolymer transporter ExbD -
  KHO07_RS21320 exbB 4679705..4680340 (-) 636 WP_162279041.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KHO07_RS21325 comA 4680439..4682673 (-) 2235 WP_212625462.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KHO07_RS21330 - 4682810..4683325 (+) 516 WP_212625463.1 DUF2062 domain-containing protein -
  KHO07_RS21335 - 4684098..4684877 (-) 780 WP_075947433.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22929.10 Da        Isoelectric Point: 7.3616

>NTDB_id=1112617 KHO07_RS21320 WP_162279041.1 4679705..4680340(-) (exbB) [Pseudomonas sp. PP3]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKKLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1112617 KHO07_RS21320 WP_162279041.1 4679705..4680340(-) (exbB) [Pseudomonas sp. PP3]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATCCTGAGTTCCATCGCGGCAATGGCGATCGTTGC
CGAGCGTCTCTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AAAAACTCAATAAAGAAAAACTCAAGGAACTGCGCGCCAACTCGCCGCTGGGTGAGATCCTGGCCGCGGGGCTGGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATCCACGAGCTGGAGCGCTACAT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGTTGCTCGGCTTGCTGGGTACGGTGTTGGGCATGATCGATATTTTCA
GCGCATTTACCGGCAGTGGCATGACCACCAACGCGTCGGTGCTGGCCGGTGGTATCTCCAAGGCCTTGATCACAACGGCG
GCCGGTTTGATGGTCGGTATCCCGTCGGTGTTCTTCCATCGATTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGGAT
GGAGCAGGAAGCGATCAAGCTGGTCGAGGTAGTGCAGGGCGACCGCGATGTGGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment