Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KHO07_RS03905 Genome accession   NZ_HG995459
Coordinates   847308..848675 (+) Length   455 a.a.
NCBI ID   WP_150734718.1    Uniprot ID   A0A5E7LYL4
Organism   Pseudomonas sp. PP3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 842308..853675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHO07_RS03880 - 842775..842942 (+) 168 WP_212626511.1 DUF2474 domain-containing protein -
  KHO07_RS03885 - 843017..844141 (-) 1125 WP_212626512.1 methyltransferase -
  KHO07_RS03890 - 844303..845034 (-) 732 WP_212626513.1 autoinducer binding domain-containing protein -
  KHO07_RS03895 - 845371..846147 (+) 777 WP_212626514.1 ferredoxin--NADP reductase -
  KHO07_RS03900 mscL 846189..846602 (-) 414 WP_150734717.1 large-conductance mechanosensitive channel protein MscL -
  KHO07_RS03905 radA 847308..848675 (+) 1368 WP_150734718.1 DNA repair protein RadA Machinery gene
  KHO07_RS03910 - 848731..849099 (-) 369 WP_150734719.1 PilZ domain-containing protein -
  KHO07_RS03915 - 849259..851325 (+) 2067 WP_212626515.1 carbon starvation CstA family protein -
  KHO07_RS03920 - 851328..851525 (+) 198 WP_054616680.1 YbdD/YjiX family protein -
  KHO07_RS03925 yjiA 851647..852618 (+) 972 WP_212626516.1 GTPase -
  KHO07_RS03930 - 852615..853304 (-) 690 WP_212626517.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48790.28 Da        Isoelectric Point: 6.8987

>NTDB_id=1112604 KHO07_RS03905 WP_150734718.1 847308..848675(+) (radA) [Pseudomonas sp. PP3]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPTGRTGWTGQQAQIKTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKTMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1112604 KHO07_RS03905 WP_150734718.1 847308..848675(+) (radA) [Pseudomonas sp. PP3]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCTCAACCTTCCCGAAATGGGCCGGCCAGTGCGGCGAGTG
CGGCGCCTGGAATACGCTGACAGAAACCATGGTGGAAAGCGGCGGGGCGGCGGCGCCCACTGGACGCACGGGTTGGACCG
GTCAACAGGCGCAAATCAAAACCCTGGCTGAAGTCAGTGTCGAAGAGATCCCGCGTTTCTCCACTGCGTCGAGTGAGCTG
GACCGGGTGTTGGGCGGTGGCCTCGTCGACGGCTCGGTGGTGCTGATCGGCGGTGACCCTGGCATCGGCAAATCGACCAT
CCTGCTGCAAACCTTGTGTAATCTCGCCAAAACCATGCCGGCCCTGTACGTCACGGGAGAGGAATCCCAGCAACAAGTGG
CGATGCGTGCCCGGCGTCTGGGCTTGCCGCAGGATCAACTGCGGGTCATGACCGAAACCTGTATCGAAACCATCATCGCC
ACGGCGCGGCTCGAGAAACCCAAGGTCATGGTGATCGACTCGATCCAGACGATCTTCACCGAGCAGTTGCAATCTGCGCC
GGGCGGCGTGTCCCAAGTGCGCGAAAGCGCGGCATTGCTGGTGCGTTATGCCAAGCAGAGCGGGACGGCGATTTTCCTGG
TGGGGCATGTCACCAAGGAAGGCGCGCTGGCCGGTCCACGGGTGCTGGAGCACATGGTCGACACCGTGTTGTATTTCGAA
GGCGAGTCCGATGGTCGTTTGCGTTTGCTGCGGGCGGTGAAAAACCGTTTCGGTGCGGTTAACGAGCTCGGTGTGTTCGG
CATGACGGACAAGGGTTTGAAAGAAGTCTCCAACCCATCGGCGATTTTTCTGACCCGTGCTCAGGAAGAAGTCCCGGGCA
GCGTGGTCATGGCCACATGGGAAGGCACCCGTCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC
AACCCTCGGCGGGTGACCTTGGGGCTGGATCAGAACCGCCTGGCGATGTTGCTGGCGGTGCTGCACCGACACGGCGGCAT
TCCGACCCACGATCAGGATGTGTTCCTCAACGTGGTTGGCGGGGTGAAGGTGCTGGAAACCGCCTCCGATCTGGCGTTGA
TGGCGGCCGTCATGTCCAGTCTGCGCAATCGGCCGCTGCCCCACGATTTGCTGGTGTTCGGCGAGGTCGGTCTGTCCGGC
GAAGTACGCCCGGTGCCCAGCGGTCAGGAACGCCTGAAGGAAGCGGCCAAGCACGGGTTCAAGCGGGCCATCGTGCCCAA
GGGCAATGCGCCGAAGGAATCACCGCCAGGGTTGCAGATCATCGCCGTGACCCGTCTGGAACAAGCCCTCGACGCACTCT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E7LYL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466
  radA Streptococcus pneumoniae Rx1

46.491

100

0.466
  radA Streptococcus pneumoniae D39

46.491

100

0.466
  radA Streptococcus pneumoniae R6

46.491

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.491

100

0.466

Multiple sequence alignment