Detailed information NTG1112533

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KHN94_RS12000
• Genome accession: NZ_HG992758
• Coordinates: 2642736..2643719 (-)
• Length: 327 a.a.
• NCBI ID: WP_182011222.1
• Uniprot ID: -
• Organism: Vibrio sp. B1FLJ16 isolate B1REV17
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2637736..2648719

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHN94_RS11990 (ACOMICROBIO_LOCUS1734)	parM	2638403..2639446 (-)	1044	WP_182032034.1	plasmid segregation protein ParM domain-containing protein	-
KHN94_RS11995 (ACOMICROBIO_LOCUS1735)	mutS	2639916..2642501 (+)	2586	WP_182032035.1	DNA mismatch repair protein MutS	-
KHN94_RS12000 (ACOMICROBIO_LOCUS1736)	rpoS	2642736..2643719 (-)	984	WP_182011222.1	RNA polymerase sigma factor RpoS	Regulator
KHN94_RS12005 (ACOMICROBIO_LOCUS1737)	-	2643796..2644695 (-)	900	WP_182032079.1	peptidoglycan DD-metalloendopeptidase family protein	-
KHN94_RS12010 (ACOMICROBIO_LOCUS1738)	-	2644745..2645371 (-)	627	WP_182032036.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
KHN94_RS12015 (ACOMICROBIO_EPCKBFOG_02456)	surE	2645368..2646165 (-)	798	WP_182032037.1	5'/3'-nucleotidase SurE	-
KHN94_RS12020 (ACOMICROBIO_LOCUS1739)	truD	2646165..2647208 (-)	1044	WP_182032038.1	tRNA pseudouridine(13) synthase TruD	-
KHN94_RS12025 (ACOMICROBIO_LOCUS1740)	ispF	2647254..2647730 (-)	477	WP_182032039.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KHN94_RS12030 (ACOMICROBIO_LOCUS1741)	ispD	2647742..2648449 (-)	708	WP_182032040.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37414.24 Da
• Isoelectric Point: 4.6134

>NTDB_id=1112533 KHN94_RS12000 WP_182011222.1 2642736..2643719(-) (rpoS) [Vibrio sp. B1FLJ16 isolate B1REV17]
MSISNTVTKVEEFDFDDESVKTVENELDKSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIRSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=1112533 KHN94_RS12000 WP_182011222.1 2642736..2643719(-) (rpoS) [Vibrio sp. B1FLJ16 isolate B1REV17]
ATGAGTATCAGCAACACAGTCACCAAAGTTGAAGAGTTTGATTTTGACGACGAGTCAGTGAAGACCGTAGAAAATGAACT
CGACAAATCATCTACAGAAAGCAAAACTGCTGCACGTGAGGAGTTCGATGCAAGCAGTAAGAGTTTAGATGCAACACAAT
TGTATTTAGGCGAAATTGGCTTTTCACCTCTACTTACCGCTGAAGAAGAAGTACTGTATGCACGCCGTGCTCTTCGAGGC
GATGAAGCCGCTCGTAAGCGCATGATCGAAAGTAACCTTCGTTTGGTTGTAAAGATCTCTCGCCGTTACAGTAACCGTGG
TTTGGCTCTGCTGGATCTTATTGAAGAGGGCAATTTAGGGCTGATTCGTGCGGTTGAGAAATTTGATCCGGAACGTGGAT
TCCGATTCTCTACTTATGCAACTTGGTGGATCCGTCAAACGATCGAGCGTGCTTTAATGAACCAAACCCGTACGATTCGT
CTGCCGATTCATGTAGTGAAAGAGCTTAACATCTATCTGCGTACTGCGCGCGAACTCTCTCAGAAGCTCGACCATGAACC
AACAGCTGAAGAGATTGCAGCACAGCTGGATATCCCGGTGGAGGACGTAAGTAAAATGCTTCGTCTGAACGAGCGTATCA
GCTCTGTCGACACCCCGATAGGCGGTGATGGTGAAAAAGCACTTCTCGACATTATTCCTGATGCCAACAATTCAGATCCT
GAAGTATCAACTCAAGATGATGATATTCGATCGTCTCTGATTCATTGGCTTGAAGAGCTGAATCCAAAACAGAAAGAGGT
ATTAGCTCGTCGTTTTGGGCTTCTTGGCTATGAGCCGTCGACATTGGAAGAAGTTGGGCGTGAAATCGGGTTAACCCGAG
AGCGTGTTCGCCAGATTCAGGTGGAAGGTTTGCGTCGTCTACGTGAAGTACTGATTAAACAAGGTTTGAATATGGAGAAC
CTGTTTAACGTCGAAGATGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 3 (Sigma70_r3) (168-241)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	85.03	100	0.869