Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   KHN94_RS11625 Genome accession   NZ_HG992758
Coordinates   2576808..2577326 (-) Length   172 a.a.
NCBI ID   WP_182031860.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16 isolate B1REV17     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2571808..2582326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN94_RS11600 (ACOMICROBIO_LOCUS1687) rimM 2571913..2572461 (-) 549 WP_182008851.1 ribosome maturation factor RimM -
  KHN94_RS11605 (ACOMICROBIO_LOCUS1688) rpsP 2572491..2572739 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  KHN94_RS11610 (ACOMICROBIO_LOCUS1689) ffh 2572950..2574332 (-) 1383 WP_182031859.1 signal recognition particle protein -
  KHN94_RS11615 (ACOMICROBIO_EPCKBFOG_02377) - 2574545..2575339 (+) 795 WP_182008853.1 inner membrane protein YpjD -
  KHN94_RS11620 (ACOMICROBIO_LOCUS1690) - 2575457..2576734 (+) 1278 WP_182008854.1 CNNM domain-containing protein -
  KHN94_RS11625 (ACOMICROBIO_LOCUS1691) luxS 2576808..2577326 (-) 519 WP_182031860.1 S-ribosylhomocysteine lyase Regulator
  KHN94_RS11630 (ACOMICROBIO_EPCKBFOG_02380) - 2577403..2578008 (-) 606 WP_182008900.1 hypothetical protein -
  KHN94_RS11635 (ACOMICROBIO_LOCUS1692) gshA 2578022..2579587 (-) 1566 WP_182031861.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.79 Da        Isoelectric Point: 4.7221

>NTDB_id=1112530 KHN94_RS11625 WP_182031860.1 2576808..2577326(-) (luxS) [Vibrio sp. B1FLJ16 isolate B1REV17]
MPLLDSFTVDHTRMSAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIASMEDVLKVESQNKIPELNEYQCGTATMHSLDEAKQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1112530 KHN94_RS11625 WP_182031860.1 2576808..2577326(-) (luxS) [Vibrio sp. B1FLJ16 isolate B1REV17]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACACGTATGAGCGCACCAGCGGTGCGAGTTGCGAAAACCATGCAAAC
CCCAAAAGGGGACACGATTACAGTGTTTGATTTGCGCTTTACGGCACCAAATAAAGATATTCTGTCGGAGAAAGGTATTC
ATACATTAGAGCATCTGTATGCGGGCTTTATGCGTAATCACCTAAATGGCGATAGTGTAGAGATCATTGATATCTCTCCG
ATGGGATGTCGTACCGGTTTTTACATGAGCCTGATTGGTACGCCTTCAGAGCAGCAAGTCGCTGATGCCTGGATTGCTTC
GATGGAAGATGTGCTGAAAGTAGAAAGCCAGAATAAAATTCCAGAGCTTAATGAATACCAGTGTGGTACAGCTACGATGC
ACTCACTGGATGAAGCCAAGCAAATTGCGAAAAATATTCTTGATGCGGGTGTGTCAGTGAATAAAAACGATGAACTGGCT
TTGCCAGAATCAATGCTGAAAGAGCTACGCATCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855

Multiple sequence alignment