Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KHN94_RS06315 Genome accession   NZ_HG992758
Coordinates   1393264..1394685 (-) Length   473 a.a.
NCBI ID   WP_182032161.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16 isolate B1REV17     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1388264..1399685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN94_RS06290 (ACOMICROBIO_LOCUS930) - 1388679..1389326 (+) 648 WP_182032158.1 thiopurine S-methyltransferase -
  KHN94_RS06295 (ACOMICROBIO_LOCUS931) purT 1389434..1390609 (-) 1176 WP_182032159.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  KHN94_RS06300 (ACOMICROBIO_LOCUS932) cdd 1390934..1391821 (-) 888 WP_182007977.1 cytidine deaminase -
  KHN94_RS06305 (ACOMICROBIO_LOCUS933) - 1392152..1392829 (-) 678 WP_182007976.1 CidB/LrgB family autolysis modulator -
  KHN94_RS06310 (ACOMICROBIO_EPCKBFOG_01286) - 1392831..1393205 (-) 375 WP_182032160.1 CidA/LrgA family protein -
  KHN94_RS06315 (ACOMICROBIO_LOCUS934) sbcB 1393264..1394685 (-) 1422 WP_182032161.1 exodeoxyribonuclease I Machinery gene
  KHN94_RS06320 (ACOMICROBIO_LOCUS935) - 1395117..1395503 (+) 387 WP_182007973.1 VOC family protein -
  KHN94_RS06325 (ACOMICROBIO_LOCUS936) - 1395595..1396170 (+) 576 WP_182032162.1 class IV adenylate cyclase -
  KHN94_RS06330 (ACOMICROBIO_EPCKBFOG_01290) - 1396201..1396635 (+) 435 WP_182032163.1 hypothetical protein -
  KHN94_RS06335 (ACOMICROBIO_EPCKBFOG_01291) - 1396804..1397043 (-) 240 WP_182032164.1 RNA-binding protein -
  KHN94_RS06340 - 1397295..1397585 (+) 291 WP_182032165.1 YkgJ family cysteine cluster protein -
  KHN94_RS06345 (ACOMICROBIO_EPCKBFOG_01292) - 1397936..1398514 (+) 579 WP_182032166.1 DJ-1/PfpI family protein -
  KHN94_RS06350 (ACOMICROBIO_LOCUS937) - 1398549..1399253 (+) 705 WP_182032167.1 aspartate/glutamate racemase family protein -
  KHN94_RS06355 (ACOMICROBIO_EPCKBFOG_01294) - 1399256..1399684 (+) 429 WP_182032168.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54605.88 Da        Isoelectric Point: 4.8709

>NTDB_id=1112521 KHN94_RS06315 WP_182032161.1 1393264..1394685(-) (sbcB) [Vibrio sp. B1FLJ16 isolate B1REV17]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGIPPQKAVQEGLSEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGIEWPENEDGFT
SFKLEHLSVRNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFEYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILDLSAEELHERLYTKREELGDLLPVPVKLVHLNKCPILAPAKTLTADNAES
IGIDRQQCLTNLALLRQHPEIREKLISLFAVERKFEKDDDVDTQLYDGFFSPADRTAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMMNLENLVHEHESDEKKIALLKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1112521 KHN94_RS06315 WP_182032161.1 1393264..1394685(-) (sbcB) [Vibrio sp. B1FLJ16 isolate B1REV17]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGCACCAACCCCGCCAAGGATCGTCCAAG
TCAATTCGCTGGTGTTCGTACAGATGAAAACTTCAATATCATCGGCGAACCTTTAGTTATGTATTGCCAGCCGCCTGCTG
ATTATCTCCCTTCACCTGAAGCGGCATTGATTACAGGAATTCCCCCTCAAAAGGCTGTTCAGGAAGGTCTTTCTGAACCT
GAATTTATTGCCAAAATCCACGCAGAATTATCCAAGCCAAACACCACCAGTTTGGGTTACAACAGTATTCGTTTTGATGA
CGAAGTAACGCGCTATACCTGTTACCGCAACTTCATTGATCCGTATGCATGGAGTTGGCAGAACGGAAATTCACGATGGG
ATCTACTTGATGTTATGCGTGCATGCCATGCGCTTCGTCCAGAAGGCATTGAGTGGCCTGAAAATGAAGACGGGTTTACT
AGTTTTAAGCTAGAGCATCTATCCGTTAGAAATGGTATCGAACACAGCAACGCGCATGATGCGATGGCTGACGTTATCGC
GACTATCGAGATGGCGAAAAAAGTCAAAGCTGCTCAACCTAAACTGTTTGAGTATTTCTTCTCGATGCGTCAAAAACGTA
AGCTGAACGAGCTGGTCGATATCGTCAATATGACACCTCTGATGCACGTATCCGGGATGTTAGGACGTGAGTGCCAGTAC
ACCAGCTGGATTGTTCCGGTTGCATGGCACCCGACCAATAATAATGCGGTAATCACCATTGATTTGGCAAAAGATCCTCA
GCCAATCCTTGATTTGTCCGCAGAAGAACTACATGAAAGACTATACACCAAGCGTGAAGAACTCGGTGATCTGTTACCTG
TGCCTGTCAAACTGGTACACCTGAACAAGTGCCCTATACTAGCACCAGCAAAAACACTGACAGCTGACAATGCAGAGTCT
ATCGGTATTGATCGTCAACAGTGTTTAACTAACCTAGCGTTACTTCGTCAGCACCCAGAGATTCGTGAGAAGCTGATCAG
CCTGTTTGCCGTTGAGCGCAAATTTGAAAAGGATGATGATGTGGATACCCAGCTTTACGATGGATTCTTCTCTCCAGCAG
ATCGCACAGCAATGGATATCATCCGAGAAACTGACCCGAACAACCTCGCAGCACTGGATATCGAATTCGATGATAAACGT
ATTAAGCCATTGCTGTTCCGTTATCGAGCCCGAAACTTCCCGGGTACGCTCGATGAACAAGAACAAAGACGCTGGGCACT
GCACTGCCGTGAAGTATTTGAAAGCCAAATCGAAGAGTACATGATGAATTTGGAAAACTTAGTTCACGAGCACGAGAGTG
ATGAAAAGAAAATCGCGCTATTAAAATCTGTTTATCGCTACGTGGAGAGCCTGGCCTCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

78.224

100

0.782

Multiple sequence alignment