Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   KHN94_RS04885 Genome accession   NZ_HG992758
Coordinates   1059554..1060957 (+) Length   467 a.a.
NCBI ID   WP_182008228.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16 isolate B1REV17     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1054554..1065957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN94_RS04865 (ACOMICROBIO_LOCUS715) rsxA 1054857..1055435 (-) 579 WP_182008231.1 electron transport complex subunit RsxA -
  KHN94_RS22510 (ACOMICROBIO_LOCUS716) - 1055836..1056390 (+) 555 WP_182008230.1 type II secretion system protein -
  KHN94_RS04880 (ACOMICROBIO_LOCUS717) uvrB 1057261..1059291 (+) 2031 WP_182008229.1 excinuclease ABC subunit UvrB -
  KHN94_RS04885 (ACOMICROBIO_LOCUS718) luxO 1059554..1060957 (+) 1404 WP_182008228.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  KHN94_RS04890 (ACOMICROBIO_LOCUS719) luxU 1060954..1061298 (+) 345 WP_182008227.1 quorum-sensing phosphorelay protein LuxU -
  KHN94_RS04895 (ACOMICROBIO_EPCKBFOG_00997) - 1061385..1062281 (-) 897 WP_182031401.1 YvcK family protein -
  KHN94_RS04900 (ACOMICROBIO_LOCUS720) moaA 1062588..1063577 (+) 990 WP_182008225.1 GTP 3',8-cyclase MoaA -
  KHN94_RS04905 (ACOMICROBIO_LOCUS721) moaB 1063667..1064179 (+) 513 WP_182008224.1 molybdenum cofactor biosynthesis protein B -
  KHN94_RS04910 (ACOMICROBIO_LOCUS722) moaC 1064207..1064686 (+) 480 WP_182008223.1 cyclic pyranopterin monophosphate synthase MoaC -
  KHN94_RS04915 (ACOMICROBIO_LOCUS723) moaD 1064683..1064940 (+) 258 WP_182008222.1 molybdopterin synthase sulfur carrier subunit -
  KHN94_RS04920 (ACOMICROBIO_LOCUS724) moaE 1064942..1065397 (+) 456 WP_182008221.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52216.58 Da        Isoelectric Point: 6.2948

>NTDB_id=1112517 KHN94_RS04885 WP_182008228.1 1059554..1060957(+) (luxO) [Vibrio sp. B1FLJ16 isolate B1REV17]
MQQNTQHQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRTPDLILLDLRLPDMTGMDVLHTVKKDH
PDVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNALRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIERFNSYEWPGNVRQLQNVLRNIVVLNHGKEITLEMLPPPINQPLAREP
KADAVELKAMTASDIVPLWMTEKLAIERAINACDGNIPRAAGYLDVSPSTIYRKLQVWNSKEEQQKA

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=1112517 KHN94_RS04885 WP_182008228.1 1059554..1060957(+) (luxO) [Vibrio sp. B1FLJ16 isolate B1REV17]
ATGCAACAAAATACTCAACATCAAAAGTCGCGTTATCTATTAATGGTCGAAGACACCGCATCTGTTGCTGCGCTGTATCG
ATCTTATCTGACGCCACTGGGTATCGACATTAATATTGTCGGTACAGGACGCGATGCGATTGAAAGCCTGAATCATCGAA
CTCCTGATCTTATCTTACTGGATTTACGTCTACCCGATATGACCGGGATGGATGTTCTACATACTGTCAAAAAAGACCAT
CCGGATGTGCCTGTCATTTTCATGACTGCTCATGGCTCTATCGATACAGCGGTAGAGGCGATGCGTCATGGCTCACAAGA
CTTCCTGATTAAGCCGTGCGAAGCAGACCGTTTACGTGTAACGGTAAATAATGCTCTTCGTAAAGCAACTAAGTTAAAAA
ATGAAGCAGATAATCCTGGCAATCAGAATTACCAGGGGTTTATCGGCAGCAGCCAAACCATGCAGCAGGTGTATAGGACC
ATCGACTCTGCTGCCAGCAGTAAAGCAAGTATTTTCATTACCGGAGAAAGTGGTACGGGTAAAGAAGTGTGCGCCGAGGC
TATCCATGCTGCGAGTAAACGCGGAGATAAACCATTTATTGCGATTAACTGTGCGGCTATCCCCAAAGATCTTATTGAAA
GTGAACTGTTTGGTCACGTAAAGGGCGCCTTTACCGGTGCTGCAAATGACCGACAAGGTGCGGCAGAGTTAGCTGATGGC
GGAACACTATTCCTCGATGAGTTATGTGAAATGGACTTGGAGCTGCAAACCAAGTTATTGCGTTTTATCCAGACCGGTAC
ATTTCAGAAAGTAGGTTCATCCAAAATGAAAAGTGTGGATGTACGTTTTGTGTGTGCGACTAACCGTGACCCGTGGAAAG
AGGTTCAGGAAGGACGTTTTCGTGAAGACTTGTACTACCGTCTGTATGTGATTCCTTTGCATTTGCCACCTTTGCGTGAG
CGTGGTGAAGACGTTATTGAAATCGCTTACTCGCTGCTTGGCTATATGTCTCACGAAGAGGGTAAAAACTTCGTTCGTTT
TTCCCAGGAGGTTATTGAACGTTTCAACAGCTATGAATGGCCAGGTAACGTTCGCCAGCTTCAGAATGTATTGCGTAACA
TTGTGGTTTTGAATCACGGCAAAGAAATTACACTCGAGATGTTACCGCCGCCAATTAATCAACCGCTAGCTCGTGAGCCC
AAAGCAGATGCAGTTGAACTAAAAGCGATGACGGCGTCAGATATCGTACCACTGTGGATGACAGAAAAATTAGCGATTGA
AAGGGCGATCAACGCGTGTGATGGCAATATTCCAAGAGCGGCGGGTTATCTTGATGTTAGCCCTTCAACGATTTATCGTA
AGTTACAAGTCTGGAACAGCAAAGAAGAGCAGCAAAAAGCATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

84.802

97.216

0.824

Multiple sequence alignment