Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   KHO06_RS13845 Genome accession   NZ_HG992751
Coordinates   3006859..3007377 (-) Length   172 a.a.
NCBI ID   WP_212581763.1    Uniprot ID   -
Organism   Vibrio sp. B1FIG11 isolate LMG10946-nano     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3001859..3012377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHO06_RS13820 (ACOMICROBIO_LOCUS1863) rimM 3001915..3002463 (-) 549 WP_005534055.1 ribosome maturation factor RimM -
  KHO06_RS13825 (ACOMICROBIO_LOCUS1864) rpsP 3002491..3002739 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  KHO06_RS13830 (ACOMICROBIO_LOCUS1865) ffh 3002950..3004332 (-) 1383 WP_005462555.1 signal recognition particle protein -
  KHO06_RS13835 (ACOMICROBIO_LMKGKHOH_00006) - 3004546..3005340 (+) 795 WP_005426660.1 inner membrane protein YpjD -
  KHO06_RS13840 (ACOMICROBIO_LOCUS1866) - 3005496..3006770 (+) 1275 WP_005426658.1 CNNM domain-containing protein -
  KHO06_RS13845 (ACOMICROBIO_LOCUS1867) luxS 3006859..3007377 (-) 519 WP_212581763.1 S-ribosylhomocysteine lyase Regulator
  KHO06_RS13850 (ACOMICROBIO_LMKGKHOH_00009) - 3007467..3008072 (-) 606 WP_005438049.1 hypothetical protein -
  KHO06_RS13855 (ACOMICROBIO_LOCUS1868) gshA 3008092..3009660 (-) 1569 WP_005426650.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19116.87 Da        Isoelectric Point: 4.7297

>NTDB_id=1112485 KHO06_RS13845 WP_212581763.1 3006859..3007377(-) (luxS) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNSDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1112485 KHO06_RS13845 WP_212581763.1 3006859..3007377(-) (luxS) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
ATGCCTTTATTAGACAGCTTTACCGTAGACCACACGCGCATGAATGCACCAGCGGTTCGTGTGGCCAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACACTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATAGTGACAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCAGC
GATGGAAGACGTACTAAAAGTAGAAAACCAAAACAAGATCCCCGAGCTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCTAAGCAAATCGCGAAGAACATTCTAGAAGCGGGTGTGGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855

Multiple sequence alignment