Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KHO06_RS10510 Genome accession   NZ_HG992751
Coordinates   2248413..2249834 (+) Length   473 a.a.
NCBI ID   WP_005428021.1    Uniprot ID   A0AAQ2XXF0
Organism   Vibrio sp. B1FIG11 isolate LMG10946-nano     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2243413..2254834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHO06_RS10490 (ACOMICROBIO_LMKGKHOH_02686) - 2243803..2244414 (-) 612 WP_212581532.1 flavin reductase family protein -
  KHO06_RS10495 (ACOMICROBIO_LOCUS1419) - 2245080..2245775 (+) 696 WP_212581533.1 NAD(P)H-binding protein -
  KHO06_RS10500 (ACOMICROBIO_LOCUS1420) - 2245969..2247342 (+) 1374 WP_045378534.1 L-cystine transporter -
  KHO06_RS10505 (ACOMICROBIO_LMKGKHOH_02689) - 2247571..2248251 (+) 681 WP_005428004.1 DUF1826 domain-containing protein -
  KHO06_RS10510 (ACOMICROBIO_LOCUS1421) sbcB 2248413..2249834 (+) 1422 WP_005428021.1 exodeoxyribonuclease I Machinery gene
  KHO06_RS10515 (ACOMICROBIO_LMKGKHOH_02691) - 2249893..2250267 (+) 375 WP_012127845.1 CidA/LrgA family protein -
  KHO06_RS10520 (ACOMICROBIO_LOCUS1422) - 2250269..2250946 (+) 678 WP_005428010.1 LrgB family protein -
  KHO06_RS10525 (ACOMICROBIO_LOCUS1423) cdd 2251211..2252098 (+) 888 WP_212581534.1 cytidine deaminase -
  KHO06_RS10530 (ACOMICROBIO_LMKGKHOH_02694) - 2252162..2252860 (-) 699 WP_050905665.1 hypothetical protein -
  KHO06_RS10535 (ACOMICROBIO_LOCUS1424) purT 2253069..2254244 (+) 1176 WP_212581535.1 formate-dependent phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54525.84 Da        Isoelectric Point: 4.9293

>NTDB_id=1112477 KHO06_RS10510 WP_005428021.1 2248413..2249834(+) (sbcB) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGELLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1112477 KHO06_RS10510 WP_005428021.1 2248413..2249834(+) (sbcB) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGCCCAAG
CCAATTCGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCGCCCGCTG
ATTACCTTCCTTCACCAGAAGCCGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGCCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACCACTAGTCTTGGCTACAACAGCATCCGCTTCGATGA
TGAAGTCACACGTTACACCTGTTATCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAGCATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGATTGC
AACGATTGAGATGGCGAAGAAAGTCAAAGCCGCTCAACCAAAGCTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCATTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGTTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCGAAGGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGTGACGAATTGGGCGAGCTGCTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTTGCGCCTGCTAAGACTCTAACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTCTAAGCAATTTAGCCTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTGATTAG
TCTATTCTCTATTGAACGTGAATTCGAAAAGAGCGACGACGTGGATACACAGCTTTATGACGGCTTCTTCTCTCCTGCAG
ACCGCGCGGCGATGGACATCATTCGTGAGACGGATCCGAACAATCTGGCTGCGTTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCTGGCACCCTGGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAG

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793

Multiple sequence alignment