Detailed information NTG1112443

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KHN79_RS11485
• Genome accession: NZ_HG992749
• Coordinates: 2530432..2531415 (-)
• Length: 327 a.a.
• NCBI ID: WP_182011222.1
• Uniprot ID: -
• Organism: Vibrio sp. B1FLJ16
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2525432..2536415

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHN79_RS11475 (ACOMICROBIO_LOCUS1682)	parM	2526098..2527141 (-)	1044	WP_182011224.1	plasmid segregation protein ParM domain-containing protein	-
KHN79_RS11480 (ACOMICROBIO_LOCUS1683)	mutS	2527612..2530197 (+)	2586	WP_182011223.1	DNA mismatch repair protein MutS	-
KHN79_RS11485 (ACOMICROBIO_LOCUS1684)	rpoS	2530432..2531415 (-)	984	WP_182011222.1	RNA polymerase sigma factor RpoS	Regulator
KHN79_RS11490 (ACOMICROBIO_LOCUS1685)	-	2531492..2532391 (-)	900	WP_182011256.1	peptidoglycan DD-metalloendopeptidase family protein	-
KHN79_RS11495 (ACOMICROBIO_LOCUS1686)	-	2532441..2533067 (-)	627	WP_182011221.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
KHN79_RS11500 (ACOMICROBIO_FLGHMIGD_02328)	surE	2533064..2533861 (-)	798	WP_182011220.1	5'/3'-nucleotidase SurE	-
KHN79_RS11505 (ACOMICROBIO_LOCUS1687)	truD	2533861..2534904 (-)	1044	WP_182011219.1	tRNA pseudouridine(13) synthase TruD	-
KHN79_RS11510 (ACOMICROBIO_LOCUS1688)	ispF	2534950..2535426 (-)	477	WP_182011218.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KHN79_RS11515 (ACOMICROBIO_LOCUS1689)	ispD	2535438..2536145 (-)	708	WP_182011217.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37414.24 Da
• Isoelectric Point: 4.6134

>NTDB_id=1112443 KHN79_RS11485 WP_182011222.1 2530432..2531415(-) (rpoS) [Vibrio sp. B1FLJ16]
MSISNTVTKVEEFDFDDESVKTVENELDKSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIRSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=1112443 KHN79_RS11485 WP_182011222.1 2530432..2531415(-) (rpoS) [Vibrio sp. B1FLJ16]
ATGAGTATCAGCAACACAGTCACCAAAGTTGAAGAGTTTGATTTTGACGACGAGTCAGTGAAGACCGTAGAAAATGAACT
CGACAAATCATCTACAGAAAGCAAAACTGCTGCACGTGAGGAGTTCGATGCAAGCAGTAAGAGTTTAGATGCAACACAAT
TGTATTTAGGCGAAATTGGCTTTTCACCTCTACTTACCGCTGAAGAAGAAGTACTGTATGCACGCCGTGCTCTTCGAGGC
GATGAAGCCGCTCGTAAGCGCATGATCGAAAGTAACCTTCGTTTGGTTGTAAAGATCTCTCGCCGTTACAGTAACCGTGG
TTTGGCTCTGCTGGATCTTATTGAAGAGGGCAATTTAGGGCTGATCCGTGCGGTTGAGAAATTTGATCCGGAACGTGGAT
TCCGATTCTCTACTTATGCAACTTGGTGGATCCGTCAAACGATCGAGCGTGCTTTAATGAACCAAACCCGTACGATTCGT
CTGCCGATTCATGTAGTGAAAGAGCTTAACATCTATCTGCGTACTGCGCGCGAACTCTCTCAGAAGCTCGACCATGAACC
AACAGCTGAAGAGATTGCAGCACAGCTGGATATCCCGGTGGAGGACGTAAGTAAAATGCTTCGTCTGAACGAGCGTATCA
GCTCTGTCGACACCCCGATAGGCGGTGATGGTGAAAAAGCACTTCTCGACATTATTCCTGATGCCAACAATTCAGATCCT
GAAGTATCAACTCAAGATGATGATATTCGATCGTCTCTGATTCATTGGCTTGAAGAGCTGAATCCAAAACAGAAAGAGGT
ATTAGCTCGTCGTTTTGGGCTTCTTGGCTATGAGCCGTCGACATTGGAAGAAGTTGGGCGTGAAATCGGGTTAACCCGAG
AGCGTGTTCGCCAGATTCAGGTGGAAGGTTTGCGTCGTCTACGTGAAGTACTGATTAAACAAGGTTTGAATATGGAGAAC
CTGTTTAACGTCGAAGATGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 3 (Sigma70_r3) (168-241)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	85.03	100	0.869